Temporal_Lobe_app

This includes everything required to build a docker and corresponding singularity container for the Temporal Lobe pipeline.

Docker Hub

Singularity Hub

Build Instructions:

Just clone and run build.sh:

git clone https://github.com/vuiiscci/Temporal_Lobe_app.git
cd Temporal_Lobe_app/
./build.sh

Run Instructions:

For docker:

sudo docker run --rm \
-v $(pwd)/INPUTS/:/INPUTS/ \
-v $(pwd)/OUTPUTS:/OUTPUTS/ \
--user $(id -u):$(id -g) \
vuiiscci/temporal_lobe

For singularity:

singularity run -e \
-B INPUTS/:/INPUTS \
-B OUTPUTS/:/OUTPUTS \
shub://vuiiscci/Temporal_Lobe_app