Open Resources (WIP)

A collection of info and resources about open science.

Study Pre-registration & Registered Reports

• Introduction to Study Pre-registration
• 'How To Properly Preregister A Study'
• Getting started
• Registered Reports

Open (Study) Materials & Analysis Scripts

OSF

Git & GitHub

https://github.com/SISBID/Module3/blob/master/2017_SISBID_3_08_git_1_solo.pdf http://neuroplausible.com/github https://kirstiejane.github.io/friendly-github-intro/ https://mybinder.org/ ?

Python, R, Rmd

https://github.com/SISBID/Module3 http://nipy.org/

Stats

https://sites.trinity.edu/osl/ https://www.coursera.org/learn/statistical-inferences https://vasishth.github.io/SMLP2017/ https://xcelab.net/rm/statistical-rethinking/

Open Data

Neuroimaging

Structural MRI Neuroimaging Human Electrophysiology Collection Functional Connectomes UK Dementia Platform Adolescent Brain Cognitive Development (ABCD) Study LONI IDA BNCI Horizon2020 ICPSR - Probs not open Mindboggle SSVEP/BCI collection EEG EEG Sleep EEG Allen Brain Atlas Normal sMRI over lifespan EPOC binaural beats data [DL openbci data(http://curiositry.github.io/assets/misc/eeg-data/openbci-binaural/Binaural-input-record-[2015.05.29-17.00.35].csv)

Other

General Data Science Video clips with labelled actions Cardiac MRI & Reports Collection of Open Psychological Datasets Natural Language Processing Prescription data ECLS

Temp down?

Pre-prints

Why preprint? http://asapbio.org/digital-age http://asapbio.org/preprint-journal-clubs https://peercommunityin.org/ http://academickarma.org/

Open Access Publishing & Open Peer Review

[https://choosealicense.com/

Open Educational Resources

Open Science MOOC Foster Open Science Open & Reproducible Science Syllabus Open Courses in Data Science for Neuroscience SISBID Codeocean Reproducibility Workshop

Open Science communities

Brainhack / OHBM https://neurostars.org/ https://osf.io/view/StudySwap/ https://psysciacc.org/ Community + hub

Misc tools / neuroinformatics

https://brainhack101.github.io/neurolinks/ http://openneu.ro/ http://sapienlabs.co/brainbase-beta/ lab.js.org OpenBCI tools: http://github.com/curiositry/EEGrunt https://datproject.org/ https://github.com/kaczmarj/neurodocker https://github.com/google/neuroglancer https://nipype.readthedocs.io/en/latest/ https://github.com/nipy/niwidgets https://github.com/NifTK/NiftyNet https://github.com/ohbm/OpenScienceDemoCalls https://thevirtualbrain.org/tvb/zwei https://mobile.twitter.com/oesteban/status/989537592197578752?s=19 https://nbviewer.jupyter.org/github/raamana/mrivis/blob/master/docs/example_notebooks/mrivis_demo_Collage_SlicePicker_classes.ipynb https://paris-saclay-cds.github.io/autism_challenge/ https://github.com/ofgulban/segmentator

BIDS: BIDS resources http://bids-apps.neuroimaging.io/ https://github.com/robertoostenveld/bids https://www.slideshare.net/mobile/chrisfilo1/openneuro-a-free-online-platform-for-sharing-and-analysis-of-neuroimaging-data https://www.slideshare.net/mobile/chrisfilo1/fmriprep-robust-and-easy-to-use-fmri-preprocessing-pipeline https://www.slideshare.net/mobile/chrisfilo1/the-brain-imaging-data-structure-ohbm-2016