fix(datagraph): iteration through edge_types wasnt updated for seg #215
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: bob-the-builder | |
| # only run on pushes to main or pull requests | |
| on: | |
| push: | |
| # push to any branch * | |
| branches: '*' | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: chartboost/ruff-action@v1 | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 15 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| - macos-latest | |
| - windows-latest | |
| python-version: | |
| - '3.10' | |
| - '3.11' | |
| - '3.12' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Pip install | |
| run: pip install . | |
| - name: Run tests | |
| run: | | |
| pip install pytest pytest-cov | |
| pytest tests -s -v --cov=imgtools --cov-report xml:coverage-report/coverage.xml | |
| - name: Upload coverage report artifact to be used by Codecov | |
| # only upload if matrix.os is ubuntu-latest and matrix.python-version is 3.12 | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| codecov: | |
| needs: tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Download coverage report artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage-report/coverage.xml | |
| fail_ci_if_error: true | |
| verbose: true | |
| name: codecov-umbrella | |
| cd: | |
| concurrency: release | |
| permissions: | |
| id-token: write | |
| actions: read | |
| contents: write | |
| packages: write | |
| issues: write | |
| pull-requests: write | |
| needs: [tests] | |
| # if pulling to main, deploy to PyPI | |
| if: github.ref == 'refs/heads/main' | |
| # Set up operating system | |
| runs-on: ubuntu-latest | |
| outputs: | |
| released: ${{ steps.release.outputs.released }} | |
| version: ${{ steps.release.outputs.version }} | |
| tag: ${{ steps.release.outputs.tag }} | |
| # Define job steps | |
| steps: | |
| - uses: actions/create-github-app-token@v1 | |
| id: app-token | |
| with: | |
| app-id: ${{ vars.SEMVERPOLICE_ID }} | |
| private-key: ${{ secrets.SEMVER_APP_KEY }} | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.12 | |
| - name: Check-out repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Python Semantic Release | |
| uses: python-semantic-release/python-semantic-release@master | |
| id: release | |
| with: | |
| root_options: -v | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| git_committer_name: 'gh-actions-semver' | |
| pip-squeak: | |
| needs: cd | |
| if: needs.cd.outputs.released == 'true' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout the code with tag ${{ needs.cd.outputs.tag }} | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.cd.outputs.tag }} | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.12 | |
| - name: Install Package Builder | |
| run: | |
| python3 -m pip install build | |
| - name: Build package | |
| run: | |
| python3 -m build --sdist --wheel --outdir dist/ | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| verbose: true | |
| user: ${{ secrets.pypi_token }} | |
| password: ${{ secrets.pypi_api }} | |
| does-the-pip-squeak: | |
| needs: pip-squeak | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.12", "3.11", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install using PyPi | |
| run: | | |
| pip install med-imagetools | |
| # autopipeline | |
| # pip install med-imagetools ==${{ needs.cd.outputs.version }} |