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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 56 28

Repositories

Showing 10 of 90 repositories
  • metagenomics_pooling_notebook Public

    Jupyter notebooks to assist with sample processing

    biocore/metagenomics_pooling_notebook’s past year of commit activity
    Jupyter Notebook 8 MIT 16 45 (2 issues need help) 6 Updated Nov 14, 2024
  • microsetta-interface Public

    The Microsetta participant facing user interface

    biocore/microsetta-interface’s past year of commit activity
    Jinja 1 BSD-3-Clause 17 45 1 Updated Nov 13, 2024
  • mg-scripts Public

    Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

    biocore/mg-scripts’s past year of commit activity
    Python 1 BSD-3-Clause 5 16 7 Updated Nov 12, 2024
  • microsetta-admin Public
    biocore/microsetta-admin’s past year of commit activity
    Python 0 BSD-3-Clause 10 16 3 Updated Oct 29, 2024
  • microsetta-private-api Public

    A private microservice to support The Microsetta Initiative

    biocore/microsetta-private-api’s past year of commit activity
    Python 6 BSD-3-Clause 19 60 2 Updated Oct 29, 2024
  • micov Public

    Aggregate genome coverage

    biocore/micov’s past year of commit activity
    Python 4 3 8 0 Updated Oct 20, 2024
  • q2-surpi Public

    A QIIME 2 plugin that connects SURPI+ results to QIIME 2 for analysis

    biocore/q2-surpi’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 2, 2024
  • q2-greengenes2 Public

    A QIIME 2 plugin for interaction with the Greengenes2 database

    biocore/q2-greengenes2’s past year of commit activity
    Python 26 BSD-3-Clause 3 5 0 Updated Oct 1, 2024
  • gemelli Public

    Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

    biocore/gemelli’s past year of commit activity
    Python 76 BSD-3-Clause 18 29 3 Updated Oct 1, 2024
  • calour Public

    exploratory and interactive microbiome analyses based on heatmaps

    biocore/calour’s past year of commit activity
    Python 27 BSD-3-Clause 22 61 4 Updated Sep 29, 2024
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