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borenstein-lab

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  1. microbiome-metabolome-curated-data microbiome-metabolome-curated-data Public

    HTML 62 27

  2. burrito burrito Public

    A visualization tool for exploratory data analysis of metagenomic data

    JavaScript 37 9

  3. fishtaco fishtaco Public

    FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts

    Python 24 4

  4. MIMOSA MIMOSA Public

    Model-based Integration of Metabolite Observations and Species Abundances

    R 24 9

  5. MUSiCC MUSiCC Public

    MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

    Python 16 5

  6. mimosa2 mimosa2 Public

    R 13 6

Repositories

Showing 10 of 26 repositories
  • KADAIF Public

    An anomaly detection method specifically designed for microbiome data.

    borenstein-lab/KADAIF’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 6, 2025
  • borenstein-lab/microbiome_metabolic_adaptation’s past year of commit activity
    R 0 0 0 0 Updated Feb 13, 2025
  • mimosa2 Public
    borenstein-lab/mimosa2’s past year of commit activity
    R 13 GPL-3.0 6 4 0 Updated Dec 16, 2024
  • borenstein-lab/microbiome-metabolome-curated-data’s past year of commit activity
    HTML 62 MIT 27 1 0 Updated Oct 16, 2024
  • borenstein-lab/multi_view_integration_analysis’s past year of commit activity
    R 11 0 0 0 Updated Jun 6, 2024
  • RDR Public
    borenstein-lab/RDR’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated May 5, 2024
  • borenstein-lab/longitudinal_interpolation’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 18, 2024
  • IIRN_multi_omic Public

    Multiomic analysis for the paper titled "Integrative analysis of untargeted serum and fecal metabolome and gut microbiome reveals a role in Crohn Disease and with signals that precede a disease flare"

    borenstein-lab/IIRN_multi_omic’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jan 17, 2024
  • vaginal_microbiome_manifold Public

    Manifold detection

    borenstein-lab/vaginal_microbiome_manifold’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 28, 2023
  • MIMOSA2shiny Public
    borenstein-lab/MIMOSA2shiny’s past year of commit activity
    R 3 GPL-3.0 0 1 0 Updated Dec 19, 2023

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