Merge pull request #405 from broadinstitute/pangolin

pangolin container update
broadinstitute · Jan 28, 2022 · 88243d6 · 88243d6
2 parents 2a24ae8 + 54d3151
commit 88243d6
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl
@@ -10,7 +10,7 @@ task pangolin_one_sample {
         Float?  max_ambig
         Boolean inference_usher=true
         Boolean update_dbs_now=false
-        String  docker = "quay.io/staphb/pangolin:3.1.17-pangolearn-2022-01-05"
+        String  docker = "quay.io/staphb/pangolin:3.1.19-pangolearn-2022-01-20"
     }
     String basename = basename(genome_fasta, ".fasta")
     command <<<
@@ -88,7 +88,7 @@ task pangolin_many_samples {
         Boolean      inference_usher=true
         Boolean      update_dbs_now=false
         String       basename
-        String       docker = "quay.io/staphb/pangolin:3.1.17-pangolearn-2022-01-05"
+        String       docker = "quay.io/staphb/pangolin:3.1.19-pangolearn-2022-01-20"
     }
     command <<<
         set -ex

diff --git a/requirements-modules.txt b/requirements-modules.txt
@@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre
 broadinstitute/ncbi-tools=2.10.7.10
 nextstrain/base=build-20211012T204409Z
 andersenlabapps/ivar=1.3.1
-quay.io/staphb/pangolin=3.1.17-pangolearn-2022-01-05
+quay.io/staphb/pangolin=3.1.19-pangolearn-2022-01-20
 nextstrain/nextclade=1.10.0