Merge pull request #409 from broadinstitute/pangolin

update pangolin and nextclade docker images
broadinstitute · Mar 22, 2022 · f7aaf2a · f7aaf2a
2 parents 4e0533a + 56f0aa7
commit f7aaf2a
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/pipes/WDL/tasks/tasks_nextstrain.wdl b/pipes/WDL/tasks/tasks_nextstrain.wdl
@@ -13,7 +13,7 @@ task nextclade_one_sample {
         File? pcr_primers_csv
         File? virus_properties
         String? dataset_name
-        String docker = "nextstrain/nextclade:1.10.0"
+        String docker = "nextstrain/nextclade:1.11.0"
     }
     String basename = basename(genome_fasta, ".fasta")
     command {
@@ -93,7 +93,7 @@ task nextclade_many_samples {
         File?        virus_properties
         String?      dataset_name
         String       basename
-        String       docker = "nextstrain/nextclade:1.10.0"
+        String       docker = "nextstrain/nextclade:1.11.0"
     }
     command <<<
         set -e

diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl
@@ -10,7 +10,7 @@ task pangolin_one_sample {
         Float?  max_ambig
         Boolean inference_usher=true
         Boolean update_dbs_now=false
-        String  docker = "quay.io/staphb/pangolin:3.1.20-pangolearn-2022-02-02"
+        String  docker = "quay.io/staphb/pangolin:3.1.20-pangolearn-2022-02-28"
     }
     String basename = basename(genome_fasta, ".fasta")
     command <<<
@@ -88,7 +88,7 @@ task pangolin_many_samples {
         Boolean      inference_usher=true
         Boolean      update_dbs_now=false
         String       basename
-        String       docker = "quay.io/staphb/pangolin:3.1.20-pangolearn-2022-02-02"
+        String       docker = "quay.io/staphb/pangolin:3.1.20-pangolearn-2022-02-28"
     }
     command <<<
         set -ex

diff --git a/requirements-modules.txt b/requirements-modules.txt
@@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre
 broadinstitute/ncbi-tools=2.10.7.10
 nextstrain/base=build-20211012T204409Z
 andersenlabapps/ivar=1.3.1
-quay.io/staphb/pangolin=3.1.20-pangolearn-2022-02-02
-nextstrain/nextclade=1.10.0
+quay.io/staphb/pangolin=3.1.20-pangolearn-2022-02-28
+nextstrain/nextclade=1.11.0