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20 Open 38 Closed
20 Open 38 Closed
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Issues list

Add ability to manually edit some fields in the nwbfile
#109 opened Mar 18, 2025 by calderast
nwbs not working with VideoFile table in spyglass spyglass For NWB compatibility with Loren Frank Lab's spyglass https://github.com/LorenFrankLab/spyglass video / dlc All things related to video and DeepLabCut position tracking
#108 opened Mar 17, 2025 by calderast
@calderast
Add test for full conversion with time alignment low-priority Do this eventually but not now (need more info, needed for a future experiment but not yet, etc) testing Things related to test code
#106 opened Mar 11, 2025 by calderast
Clean up some pass by value vs pass by reference stuff low-priority Do this eventually but not now (need more info, needed for a future experiment but not yet, etc)
#103 opened Mar 10, 2025 by calderast
Create an electrode group for each shank for sorting in spyglass ephys All things related to electrophysiology processing high-priority Do now! This is blocking someone's progress and/or is essential for the functioning of the pipeline spyglass For NWB compatibility with Loren Frank Lab's spyglass https://github.com/LorenFrankLab/spyglass
#89 opened Feb 26, 2025 by calderast
@rly
1
Add decoded x, y (and other decode metrics) to NWB ephys All things related to electrophysiology processing high-priority Do now! This is blocking someone's progress and/or is essential for the functioning of the pipeline
#84 opened Feb 24, 2025 by calderast
@calderast
Add electrode channel IDs to Units table when converting MountainSort spikes ephys All things related to electrophysiology processing
#79 opened Feb 14, 2025 by rly
@rly
For barrier switch trials, we might not switch the barrier at the right time. Write a function to update the block and trial info accordingly behavior All things related to behavior processing
#76 opened Feb 10, 2025 by calderast
@calderast
Add graphs for combined phot/behavior data (signals aligned to port entry) behavior All things related to behavior processing photometry All things related to photometry processing plot All things plotting
#72 opened Feb 7, 2025 by calderast
@calderast
Add graphs for behavior behavior All things related to behavior processing plot All things plotting
#71 opened Feb 7, 2025 by calderast
Add additional photometry metadata photometry All things related to photometry processing
#62 opened Jan 27, 2025 by rly
1
Parse subject DOB as datetime object instead of string. For now use ISO format or age instead bug Something isn't working quick-fix Minor one-liner to improve
#60 opened Jan 27, 2025 by calderast
@calderast
Adds graphs for ephys ephys All things related to electrophysiology processing plot All things plotting
#45 opened Jan 17, 2025 by calderast
Add tests for Frank Lab behavior processing behavior All things related to behavior processing frank-lab Things for Frank Lab (+ Xulu <3) testing Things related to test code
#43 opened Jan 17, 2025 by calderast
@calderast
Frank Lab behavior processing behavior All things related to behavior processing frank-lab Things for Frank Lab (+ Xulu <3)
#42 opened Jan 17, 2025 by calderast
@calderast
Add photometry metadata! photometry All things related to photometry processing
#37 opened Jan 10, 2025 by calderast
@rly
Write tests for parsed metadata (subject, lab, experimenter, etc) and complain to user if missing quick-fix Minor one-liner to improve testing Things related to test code
#33 opened Jan 8, 2025 by calderast
Add pyphotometry conversion for non-Jose use low-priority Do this eventually but not now (need more info, needed for a future experiment but not yet, etc) photometry All things related to photometry processing
#28 opened Dec 20, 2024 by calderast
Add opto conversion section for metadata and stim times etc etc low-priority Do this eventually but not now (need more info, needed for a future experiment but not yet, etc)
#27 opened Dec 20, 2024 by calderast
1
Create a bunch of figures as a sanity check with the NWB behavior All things related to behavior processing ephys All things related to electrophysiology processing photometry All things related to photometry processing plot All things plotting
#25 opened Dec 20, 2024 by calderast
7 of 17 tasks
1
ProTip! Exclude everything labeled bug with -label:bug.