still debugging process aln

Dockerfile

@@ -14,8 +14,8 @@ RUN apt-get autoremove -y
 
 RUN pip install --upgrade pip
 
-RUN wget https://github.com/cmatKhan/callingCardsTools/archive/refs/tags/v0.0.8.tar.gz
+RUN wget https://github.com/cmatKhan/callingCardsTools/archive/refs/tags/v0.0.9.tar.gz
 
-RUN pip install v0.0.8.tar.gz
+RUN pip install v0.0.9.tar.gz
 
-RUN rm v0.0.8.tar.gz
+RUN rm v0.0.9.tar.gz

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "callingCardsTools"
-version = "0.0.8"
+version = "0.0.9"
 description = "A collection of objects and functions to work with calling cards sequencing tools"
 authors = ["chase mateusiak <[email protected]>"]
 license = "MIT"

src/callingcardstools/database_managers/yeast/HopsDb.py

@@ -309,21 +309,26 @@ def add_batch_qc(self, barcode_details:BarcodeParser,id_to_bc_map_path:str = Non
         tfs = list(barcode_details.barcode_dict['components']['tf']['map'].values())
         batch = barcode_details.barcode_dict['batch']
 
+        parsed_tfs = []
         replicates = []
         for x in tfs:
             try:
-                replicates.append(x.split(split_char)[1].replace(')', ''))
+                tf = x.split(split_char)[0].replace(')', '')
+                rep = x.split(split_char)[1].replace(')', '')
             except IndexError:
-                replicates.append('none')
+                tf = x
+                rep = 'none'
+            parsed_tfs.append(tf)
+            replicates.append(rep)
 
-        tfs.append('undetermined')
+        parsed_tfs.append('undetermined')
         replicates.append('none')
 
         # create df with nrow == len(tfs). batch is repeated for each record. 
         # records is either split from the tf name, or 'none'
         df = pd.DataFrame(
-            {'batch': [batch for x in tfs], 
-            'tf': tfs, 
+            {'batch': [batch for x in parsed_tfs], 
+            'tf': parsed_tfs, 
             'replicate': replicates })
 
         # by row, check if the entry already exists. if it does, then insert.