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56 Open 132 Closed
56 Open 132 Closed
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Issues list

Review a3m parsing code
#316 opened Nov 5, 2024 by thomashopf
@thomashopf
ResourceError when running evcouplings_dbupdate
#304 opened Dec 20, 2023 by MarioAsti8
2
SIFTS
#298 opened Jul 21, 2023 by t9lex
4
Complex Pipeline still Coupling Successful, but after ended with an runtime error
#297 opened Jun 23, 2023 by Prasanth-Kumar87
Error in evcouplings_dbupdate
#295 opened Jun 13, 2023 by Agarwalvidhu
KeyError: 'samples' using complex pipeline
#285 opened Feb 8, 2023 by kirannazarali
3
Feat request: Alphafold within EVCouplings
#284 opened Jan 12, 2023 by zachcp
3
Incorporate hhpred for pdb search in compare stage feature
#276 opened Apr 26, 2022 by kpgbrock
lack of explicit separator in read_csv in /mutate/protocol.py enhancement
#272 opened Feb 3, 2022 by paulaberry
3
Non-alphabet characters aren't counted as gaps when computing sequence coverage enhancement
#268 opened Nov 9, 2021 by nikkithadani
@thomashopf
1
Unable to perform the de novo protein structure prediction.
#266 opened Apr 29, 2021 by sebel76
2
Add 2ndary structure pred. from ECs enhancement help wanted
#264 opened Apr 19, 2021 by njrollins
Add alignment summary: organisms enhancement help wanted
#263 opened Apr 19, 2021 by njrollins
1
Add statistics about filtered sequences to output feature
#262 opened Apr 7, 2021 by thomashopf
@thomashopf
CouplingsScoresCompared_longrange.csv misses couplings
#252 opened Oct 7, 2020 by ddingding
4
Computation of N_eff when the align stage (but not the couplings stage) is run enhancement
#251 opened Oct 7, 2020 by berkalpay
@thomashopf
3
Add 'existing paired alignment' to complex pipeline enhancement feature
#247 opened Aug 7, 2020 by njrollins
2
evcomplex scoring model
#234 opened Apr 17, 2020 by cross12tamu
6
Output alignment file sorted by sequence identity enhancement
#226 opened Oct 28, 2019 by kpgbrock
More flexible sequence weight handling enhancement
#224 opened Aug 9, 2019 by thomashopf
Add MMseqs2 as align protocol feature prio: low
#218 opened Jun 25, 2019 by sacdallago
1
InvalidParameterError: provided annotation file has no annotation information complex enhancement wontfix
#214 opened Apr 2, 2019 by sacdallago
3
Mapping from target to model positions does not contain all positions of internal model numbering bug complex
#213 opened Apr 2, 2019 by sacdallago
18
Use dedicated alignment for hmmsearch-based structure search enhancement
#210 opened Feb 25, 2019 by thomashopf
Inter distance calculations shouldn't use same region on same chain enhancement
#209 opened Feb 25, 2019 by thomashopf
@aggreen
ProTip! What’s not been updated in a month: updated:<2024-10-10.