Merge pull request #22434 from PetrKralCZ/20250303134430_new_pr_MEGAH…

…IT129

{bio}[GCCcore/13.3.0] MEGAHIT v1.2.9

easybuild/easyconfigs/m/MEGAHIT/MEGAHIT-1.2.9-GCCcore-13.3.0.eb

@@ -0,0 +1,48 @@
+easyblock = 'CMakeMake'
+
+name = 'MEGAHIT'
+version = '1.2.9'
+
+homepage = 'https://github.com/voutcn/megahit'
+description = """An ultra-fast single-node solution for large and complex
+metagenomics assembly via succinct de Bruijn graph"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = ['https://github.com/voutcn/%(namelower)s/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['09026eb07cc4e2d24f58b0a13f7a826ae8bb73da735a47cb1cbe6e4693118852']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('CMake', '3.29.3'),
+    ('zlib', '1.3.1'),
+]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('bzip2', '1.0.8'),
+    ('gzip', '1.13'),
+]
+
+# fix the `error: uint32_t does not name a type` error
+prebuildopts = "sed -i 's/#include <string>/#include <string>\\n#include <cstdint>/g' "
+prebuildopts += "%(builddir)s/%(namelower)s-%(version)s/src/localasm/local_assemble.h && "
+
+sanity_check_paths = {
+    'files': [
+        'bin/%(namelower)s',
+        'bin/%(namelower)s_core',
+        'bin/%(namelower)s_core_no_hw_accel',
+        'bin/%(namelower)s_core_popcnt',
+        'bin/%(namelower)s_toolkit',
+    ],
+    'dirs': [],
+}
+
+sanity_check_commands = [
+    "megahit --version",
+    "megahit --test",
+]
+
+moduleclass = 'bio'