Dev weather data (#24)

* Include weather data from IDEAM * draft satellite weather Climate from NASA satellite images (MODIS) * Update package dependencies * Update WORDLIST * Update imports * Include weather from IDEAM Include functions to - Get IDEAM stations in a given ROI - Retrieve data for IDEAM stations - Aggregate data for each ROI or municipality - Plot output * Update CITATION.cff * Update lintr * Remove unnecessary assertions * Include multiple weather tags Include the possibility to retrieve multiple tags to retrieve weather data * Update paths for weather data download * Update path * Merge branch 'main' into dev-weather_data * Update download function usage * Update test-download_weather.R * Update weather plot * Update individual plot limits * Update download_weather.R * Update test cases * Temporal fix on test * Update lintr * Change plot function Plot function with ggplot * Update CITATION.cff * Update download_weather.R * Remove ggplot dependency * Update CITATION.cff * Remove unnecessary comments * Remove graphics Remove automatic plots * Update CITATION.cff * Update documentation * Update test-download_weather.R --------- Co-authored-by: GitHub Action <[email protected]>
epiverse-trace · Nov 30, 2023 · 55b9e4d · 55b9e4d
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diff --git a/CITATION.cff b/CITATION.cff
@@ -184,30 +184,6 @@ references:
     given-names: JJ
     email: [email protected]
   year: '2023'
-- type: software
-  title: dplyr
-  abstract: 'dplyr: A Grammar of Data Manipulation'
-  notes: Imports
-  url: https://dplyr.tidyverse.org
-  repository: https://CRAN.R-project.org/package=dplyr
-  authors:
-  - family-names: Wickham
-    given-names: Hadley
-    email: [email protected]
-    orcid: https://orcid.org/0000-0003-4757-117X
-  - family-names: François
-    given-names: Romain
-    orcid: https://orcid.org/0000-0002-2444-4226
-  - family-names: Henry
-    given-names: Lionel
-  - family-names: Müller
-    given-names: Kirill
-    orcid: https://orcid.org/0000-0002-1416-3412
-  - family-names: Vaughan
-    given-names: Davis
-    email: [email protected]
-    orcid: https://orcid.org/0000-0003-4777-038X
-  year: '2023'
 - type: software
   title: httr
   abstract: 'httr: Tools for Working with URLs and HTTP'
@@ -219,17 +195,6 @@ references:
     given-names: Hadley
     email: [email protected]
   year: '2023'
-- type: software
-  title: janitor
-  abstract: 'janitor: Simple Tools for Examining and Cleaning Dirty Data'
-  notes: Imports
-  url: https://sfirke.github.io/janitor/
-  repository: https://CRAN.R-project.org/package=janitor
-  authors:
-  - family-names: Firke
-    given-names: Sam
-    email: [email protected]
-  year: '2023'
 - type: software
   title: magrittr
   abstract: 'magrittr: A Forward-Pipe Operator for R'
@@ -244,23 +209,6 @@ references:
     given-names: Hadley
     email: [email protected]
   year: '2023'
-- type: software
-  title: readr
-  abstract: 'readr: Read Rectangular Text Data'
-  notes: Imports
-  url: https://readr.tidyverse.org
-  repository: https://CRAN.R-project.org/package=readr
-  authors:
-  - family-names: Wickham
-    given-names: Hadley
-    email: [email protected]
-  - family-names: Hester
-    given-names: Jim
-  - family-names: Bryan
-    given-names: Jennifer
-    email: [email protected]
-    orcid: https://orcid.org/0000-0002-6983-2759
-  year: '2023'
 - type: software
   title: readxl
   abstract: 'readxl: Read Excel Files'
@@ -304,7 +252,7 @@ references:
     orcid: https://orcid.org/0000-0001-8049-7069
   year: '2023'
 - type: software
-  title: stats
+  title: utils
   abstract: 'R: A Language and Environment for Statistical Computing'
   notes: Imports
   authors:
@@ -315,31 +263,60 @@ references:
   institution:
     name: R Foundation for Statistical Computing
 - type: software
-  title: stringr
-  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
+  title: lubridate
+  abstract: 'lubridate: Make Dealing with Dates a Little Easier'
   notes: Imports
-  url: https://stringr.tidyverse.org
-  repository: https://CRAN.R-project.org/package=stringr
+  url: https://lubridate.tidyverse.org
+  repository: https://CRAN.R-project.org/package=lubridate
   authors:
+  - family-names: Spinu
+    given-names: Vitalie
+    email: [email protected]
+  - family-names: Grolemund
+    given-names: Garrett
   - family-names: Wickham
     given-names: Hadley
-    email: [email protected]
   year: '2023'
 - type: software
-  title: tidyr
-  abstract: 'tidyr: Tidy Messy Data'
+  title: readr
+  abstract: 'readr: Read Rectangular Text Data'
+  notes: Imports
+  url: https://readr.tidyverse.org
+  repository: https://CRAN.R-project.org/package=readr
+  authors:
+  - family-names: Wickham
+    given-names: Hadley
+    email: [email protected]
+  - family-names: Hester
+    given-names: Jim
+  - family-names: Bryan
+    given-names: Jennifer
+    email: [email protected]
+    orcid: https://orcid.org/0000-0002-6983-2759
+  year: '2023'
+- type: software
+  title: dplyr
+  abstract: 'dplyr: A Grammar of Data Manipulation'
   notes: Imports
-  url: https://tidyr.tidyverse.org
-  repository: https://CRAN.R-project.org/package=tidyr
+  url: https://dplyr.tidyverse.org
+  repository: https://CRAN.R-project.org/package=dplyr
   authors:
   - family-names: Wickham
     given-names: Hadley
     email: [email protected]
+    orcid: https://orcid.org/0000-0003-4757-117X
+  - family-names: François
+    given-names: Romain
+    orcid: https://orcid.org/0000-0002-2444-4226
+  - family-names: Henry
+    given-names: Lionel
+  - family-names: Müller
+    given-names: Kirill
+    orcid: https://orcid.org/0000-0002-1416-3412
   - family-names: Vaughan
     given-names: Davis
     email: [email protected]
-  - family-names: Girlich
-    given-names: Maximilian
+    orcid: https://orcid.org/0000-0003-4777-038X
   year: '2023'
 - type: software
   title: 'R: A Language and Environment for Statistical Computing'

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -40,7 +40,10 @@ Imports:
     readxl,
     rlang,
     sf,
-    utils
+    utils,
+    lubridate,
+    readr,
+    dplyr
 VignetteBuilder: knitr
 Depends: 
     R (>= 3.2.0)

diff --git a/NAMESPACE b/NAMESPACE
@@ -3,4 +3,8 @@
 export("%>%")
 export(download_demographic)
 export(download_geospatial)
+export(download_weather)
+export(stations_in_roi)
+export(weather_stations)
 importFrom(magrittr,"%>%")
+importFrom(rlang,.data)