Skip to content

Commit

Permalink
minor spelling corrections
Browse files Browse the repository at this point in the history
  • Loading branch information
ntorresd committed Feb 20, 2025
1 parent c162960 commit c259c51
Show file tree
Hide file tree
Showing 4 changed files with 8 additions and 4 deletions.
4 changes: 2 additions & 2 deletions CITATION.cff
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ license: MIT
title: 'serofoi: Bayesian Estimation of the Force of Infection from Serological Data'
version: 1.0.2
abstract: Estimating the force of infection from time varying, age varying, or constant
serocatalytic models from population based seroprevalence studies using a bayesian
serocatalytic models from population based seroprevalence studies using a Bayesian
framework, including data simulation functions enabling the generation of serological
surveys based on this models. This tool also provides a flexible prior specification
syntax for the force of infection and the seroreversion rate, as well as methods
Expand Down Expand Up @@ -229,7 +229,7 @@ references:
title: Matrix
abstract: 'Matrix: Sparse and Dense Matrix Classes and Methods'
notes: Imports
url: https://Matrix.R-forge.R-project.org
url: https://R-forge.R-project.org/tracker/?atid=294&group_id=61
repository: https://CRAN.R-project.org/package=Matrix
authors:
- family-names: Bates
Expand Down
2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ Authors@R: c(
person("Pontificia Universidad Javeriana", role = "cph")
)
Description: Estimating the force of infection from time varying, age varying, or constant
serocatalytic models from population based seroprevalence studies using a bayesian framework,
serocatalytic models from population based seroprevalence studies using a Bayesian framework,
including data simulation functions enabling the generation of serological surveys based on this
models. This tool also provides a flexible prior specification syntax for the force of infection
and the seroreversion rate, as well as methods to assess model convergence and comparison
Expand Down
4 changes: 4 additions & 0 deletions inst/WORDLIST
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ BMJ
Bahia
Bajaj
Basáñez
Bayesian
Binom
CMD
Christl
Expand Down Expand Up @@ -43,6 +44,7 @@ Quevedo
RStan
Refactorization
Serocatalytic
Serological
Seroreversion
Serosurvey
Serosurveys
Expand Down Expand Up @@ -98,9 +100,11 @@ rstan
sd
se
serocatalytic
serological
seromodel
seropositives
seropositivities
seroprevalence
seroreversion
serosurvey
serosurveys
Expand Down
2 changes: 1 addition & 1 deletion vignettes/serofoi.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ Current version of ***serofoi*** includes the following assumptions on the under
* There is no impact from migration processes in the sampled population, which means the model is not suited for a situation with high levels of migration.
* There are no differences in the mortality rate of infected versus susceptible individuals. This may be a limitation for situations with a high infection fatality rate, such as Ebola.

## The bayesian statistical framework
## The Bayesian statistical framework

To assess how well the mathematical representation of the different FoI models describes the seroprevalence data, we implement a fitting process that relies on a Bayesian framework. The priors and upper priors for each model indicate the assumed trajectory of the FoI (either constant or time-varying). serofoi provides a set of Bayesian comparison methods for the user to choose between various possible FoI models (trajectories) that best fit the seroprevalence data. For details see [An Introduction To Force-of-Infection Models](https://epiverse-trace.github.io/serofoi/articles/foi_models.html).

Expand Down

0 comments on commit c259c51

Please sign in to comment.