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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 217 112

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 198 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 98 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 85 36

  5. task-execution-schemas task-execution-schemas Public

    83 29

  6. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    83 39

Repositories

Showing 10 of 125 repositories
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 3 Apache-2.0 2 10 (2 issues need help) 0 Updated Feb 11, 2025
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 85 Apache-2.0 36 22 (1 issue needs help) 3 Updated Feb 11, 2025
  • gks-core Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-core’s past year of commit activity
    Python 2 Apache-2.0 0 4 2 Updated Feb 11, 2025
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 53 Apache-2.0 29 44 (1 issue needs help) 6 Updated Feb 11, 2025
  • ga4gh/task-execution-schemas’s past year of commit activity
    83 Apache-2.0 29 40 10 Updated Feb 10, 2025
  • refget Public

    GA4GH Refget specifications docs

    ga4gh/refget’s past year of commit activity
    HTML 14 7 18 1 Updated Feb 10, 2025
  • fasp-scripts Public
    ga4gh/fasp-scripts’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 6 9 0 Updated Feb 10, 2025
  • schema-registry Public

    Repository of schemas to be loaded by the schema registry API

    ga4gh/schema-registry’s past year of commit activity
    0 Apache-2.0 0 2 1 Updated Feb 4, 2025
  • htsget-compliance Public

    Compliance testing for htsget deployments

    ga4gh/htsget-compliance’s past year of commit activity
    Python 1 Apache-2.0 2 0 1 Updated Feb 3, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    ga4gh/va-spec-python’s past year of commit activity
    Python 1 Apache-2.0 1 5 1 Updated Jan 31, 2025