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flashpca v1.2.5
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@gabraham gabraham released this 01 Dec 23:43
· 221 commits to master since this release
v1.2.5
4d7124c

Major changes

  • Fixed bug in reading PLINK bed files, allowing analysis of larger datasets (essentially limited by available RAM). Has been tested on Linux with datasets with ~160,000 individuals and ~139,000 SNPs (requiring 166GB RAM using --mem low).
  • Clean-ups and better documentation for flashpcaR.

Files in this release:

flashpcaR (R package)

  • flashpcaR_1.2.5.tgz: flashpcaR R binary package for Mac 64-bit (compiled on 10.10.5 with gcc 4.9)
  • flashpcaR_1.2.5.zip: flashpcaR R binary package for Windows (compiled on http://win-builder.r-project.org)
  • flashpcaR_1.2.5.tar.gz: flashpcaR source package, for Linux (requires compiling)

flashpca (command line tool)

  • flashpca_x86-64: static binary for 64-bit Linux (>=2.6.15), compiled with gcc 5.1.1, Eigen 3.2.5, Boost 1.55.0, with march=core2
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