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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 139 47

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 49 11

  3. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 41 22

  4. absplice absplice Public

    Python 34 4

  5. scooby scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 18 2

Repositories

Showing 10 of 53 repositories
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 139 MIT 47 35 4 Updated Mar 7, 2025
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    gagneurlab/OUTRIDER’s past year of commit activity
    R 49 MIT 11 15 1 Updated Mar 5, 2025
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 41 MIT 22 25 0 Updated Mar 4, 2025
  • gagneurlab/drop_demo_data’s past year of commit activity
    0 1 0 0 Updated Mar 2, 2025
  • Watershed Public Forked from BennyStrobes/Watershed

    Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq

    gagneurlab/Watershed’s past year of commit activity
    Jupyter Notebook 0 12 0 0 Updated Feb 26, 2025
  • gagneurlab/abexp-ukbb-prs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 26, 2025
  • gagneurlab/abexp-ukbb-variant-clumping’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 26, 2025
  • abexp-ukbb-trait-analysis Public

    UK Biobank trait analysis with AbExp scores

    gagneurlab/abexp-ukbb-trait-analysis’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 26, 2025
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Feb 26, 2025
  • wBuild Public

    R project report builder

    gagneurlab/wBuild’s past year of commit activity
    Python 4 6 11 (3 issues need help) 6 Updated Feb 26, 2025

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