Merge "no-diff-to-benchmark" updates into main for 14.4.3 release

This merge brings the "no-diff-to-benchmark" updates into the main
branch in preparation for the GEOS-Chem 14.4.3 release.

Signed-off-by: Bob Yantosca <[email protected]>

.github/workflows/stale.yml

@@ -22,7 +22,7 @@ jobs:
       with:
         repo-token: ${{ secrets.GITHUB_TOKEN }}
         stale-issue-label: 'stale'
-        exempt-issue-labels: 'category: Discussion','category: Feature Request','deferred','help needed: Open Research Problem','help needed: Request Input from Community','never stale','TODO: Documentation'
+        exempt-issue-labels: ['category: Discussion','category: Feature Request','deferred','help needed: Open Research Problem','help needed: Request Input from Community','never stale','TODO: Documentation']
         days-before-issue-stale: 30
         days-before-issue-close: 7
         stale-issue-message: 'This issue has been automatically marked as stale because it has not had recent activity. If there are no updates within 7 days it will be closed. You can add the "never stale" tag to prevent the issue from closing this issue.'

CHANGELOG.md

@@ -4,27 +4,48 @@ This file documents all notable changes to the GEOS-Chem repository starting in
 
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [Unreleased] - TBD
+### Added
+- Added ModelEe.2 (GCAP 2.0) simulation to integration tests for GCClassic
+- Added simulation with all diagnostics on in HISTORY.rc to integration tests for GCClassic (including Planeflight + ObsPack) and GCHP
+- Added descriptive error message in `Interfaces/GCHP/gchp_historyexportsmod.F90`
+- Auto-update GCHP HEMCO_Diagn.rc settings at run-time to ensure seasalt, dust, soil NOx, and biogenic emissions match settings in HEMCO_Config.rc
+
+### Fixed
+- Added brackets around `exempt-issue-labels` list in `.github/workflows/stale.yml`
+
+### Removed
+- Removed `XNUMOL_H2O2 / CM3PERM3` in routine `Chem_H2O2`, which removes an unnecessary unit conversion for the aerosol-only simulation
+
 ## [14.4.2] - 2024-07-24
 ### Added
 - Added number of levels with clouds for photolysis to geoschem_config.yml and Input_Opt to pass to Cloud-J
 - Added `State_Grid%CPU_Subdomain_ID` and `State_Grid%CPU_Subdomain_FirstID` as "identifier numbers" for multiple instances of GEOS-Chem on one core in WRF and CESM
+- Added transport tracer run directory option for global half-degree GC-Classic run with GEOS-IT 0.5x0.625 fields
 
 ### Changed
 - Now reset `State_Diag%SatDiagnCount` to zero in routine`History_Write` (instead of in `History_Netcdf_Write`)
 - Update rundir creation scripts to turn off the MEGAN extension for "standard" fullchem simulations
 - Updated emissions used in CESM to match standard emissions used in the 14.4 offline model
 - Disable support For FAST-JX for all simulations except Hg
+- Replace calls to `GEOS_CHEM_STOP` with calls to `GC_Error` in `planeflight_mod.F90`
+- Script `test/integration/GCHP/integrationTestExecute.sh` now resets `cap_restart` time to `000000`, to facilitate manual restart
 
 ### Fixed
 - Typo in `setCommonRunSettings.sh` that made GCHP always choose mass fluxes for meteorology
 - Fixed bug in # levels with cloud used in photolysis when using GCAP met or CESM
 - Fixed typos for `SatDiagnEdge` collection in `HISTORY.rc` templates
 - The `SatDiagnOH` diagnostic now works for the carbon simulation
+- Restored missing fields for `UVFlux` collection in `run/GCClassic/HISTORY.rc.templates/HISTORY.rc.fullchem`
+- Comment out `UVFlux` diagnostic in the "alldiags" integration test, there is a floating point error.  Look at this later.
+- Now use SO4 instead of O3 in the GCHP fullchem budget diagnostic (SO4 is soluble, O3 is not)
+- Convert `UVFlux_Tag_Names` to uppercase in the comparison in `Get_UVFlux_Bin`(located in`Headers/state_diag_mod.F90`)
+- Fixed typo (missing `_` character) in GCHP `DryDep` collection diagnostic entries
+- Commented out with `###` emissions diagnostics in the GCHP `HISTORY.rc.fullchem` template that are not present in the corresponding `HEMCO_DIAGN.rc` template
 
 ### Removed
 - Entry `SatDiagnPEDGE` from the `SatDiagn` collection; This needs to go into the `SatDiagnEdge` collection.
 
-
 ### Changed
 - Only read photolysis data in `Init_Photolysis` in first instance of GEOS-Chem on each PET in CESM as PIO requires it
 
@@ -428,6 +449,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 - Removed State_Met%LWI and input meteorology LWI from carbon simulation run config files
 - Removed function `CLEANUP_UCX`; deallocations are now done in `state_chm_mod.F90`
 
+## [Unreleased] - TBD
+### Added
+- Tropopause pressure field in the satellite diagnostic (by @eamarais)
+
 ## [14.1.0] - 2023-02-01
 ### Added
 - Added dry deposition updates to Hg0 from Feinberg22 ESPI publication + AMAP emissions

GeosCore/diagnostics_mod.F90

@@ -1521,6 +1521,13 @@ SUBROUTINE Do_Archive_SatDiagn( Input_Opt,  State_Chm,  State_Diag,        &
           State_Diag%SatDiagnTROPP(I,:) = State_Met%TROPP(I,:) * good
        ENDIF
 
+       !---------------------------------------------------------------------
+       ! Tropopause level [unitless]:
+       !---------------------------------------------------------------------
+       IF ( State_Diag%Archive_SatDiagnTropLev ) THEN
+          State_Diag%SatDiagnTropLev(I,:) = State_Met%TropLev(I,:) * good
+       ENDIF
+
        !---------------------------------------------------------------------
        ! PBL Height [m]:
        !---------------------------------------------------------------------