remove .zarr suffix from keys or partial keys in signal analysis program

gerlichlab · Feb 19, 2025 · 1ce94ab · 1ce94ab
1 parent f23e887
commit 1ce94ab
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/bin/cli/run_signal_analysis.py b/bin/cli/run_signal_analysis.py
@@ -180,11 +180,11 @@ def workflow(
                         # Build up the records for this ROI type, for all FOVs.
                         by_raw_channel: Mapping[int, list[dict]] = defaultdict(list)
                         # TODO: refactor with https://github.com/gerlichlab/gertils/issues/32
-                        for raw_fov, raw_img in N.iterate_over_pairs_of_fov_name_and_original_image():
-                            fov: str = raw_fov.removesuffix(".zarr")
+                        for fov, raw_img in N.iterate_over_pairs_of_fov_name_and_original_image():
+                            fov: str = fov.removesuffix(".zarr")
                             img = raw_img.compute()
                             logging.info(f"Analysing signal for FOV: {fov}")
-                            nuc_drift: DriftRecord = all_nuclei_drifts[raw_fov]
+                            nuc_drift: DriftRecord = all_nuclei_drifts[fov]
                             rois: pd.DataFrame = all_rois[all_rois[FIELD_OF_VIEW_COLUMN] == fov]
                             logging.info("ROI count: %d", rois.shape[0])
                             for _, r in rois.iterrows():