pass the optional timepoint along to the real label determination fun…

…ction
gerlichlab · Feb 19, 2025 · d3fa335 · d3fa335
1 parent da55100
commit d3fa335
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/bin/cli/assign_spots_to_nucs.py b/bin/cli/assign_spots_to_nucs.py
@@ -39,7 +39,7 @@ def _determine_labels(
     new_col: str, 
     nuc_drift: pd.DataFrame, 
     spot_drifts: pd.DataFrame,
-    timepoint: Option[int] = Option.Nothing(),
+    timepoint: Option[int],
 ) -> pd.DataFrame:
     """
     Check if a spot is in inside a segmented nucleus.
@@ -215,6 +215,7 @@ def combine_subtables(ts: list[pd.DataFrame]) -> pd.DataFrame:
             new_col=NUC_LABEL_COL, 
             nuc_drift=get_nuc_drift(pos), 
             spot_drifts=get_spot_drifts(pos),
+            timepoint=timepoint,
         )
         subtables.append(rois.copy())