RNA-SeQC 2.3.6

New Features:

• Added new python scripts to the python/ directory. These scripts are useful for viewing and aggregating RNA-SeQC results
  • The python code is now distributed on pip! Install with pip install rnaseqc or (from the cloned repo) pip install -e python
  • The python code has moved in the docker image. Run utilities inside the image with python3 -m rnaseqc

Bug Fixes:

• Fixed a bug which caused too much leniency when selecting reads for the insert size distribution
• Fixed a bug which allowed for genes shorter than the coverage mask to be counted as having 0 coverage
• Chimeric Alignment Rate now uses the correct numerator
• Fixed a bug in median calculation
• Fixed a bug in fragment size statistics

Other changes:

• Removed the Reads excluded from exon counts metric. This stopped being used a while ago but was still reported (at 0)
• Removed the Duplicate Reads metric. It has no practical difference to Mapped Duplicate Reads