Skip to content
@gitter-lab

Gitter Lab

Computational biology research group at UW-Madison and the Morgridge Institute

Popular repositories Loading

  1. nn4dms nn4dms Public

    Neural networks for deep mutational scanning data

    Jupyter Notebook 67 18

  2. metl metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    Python 34 5

  3. LPWC LPWC Public

    Lag Penalized Weighted Correlation for Time Series Clustering

    R 20 3

  4. metl-sim metl-sim Public

    High-throughput framework for running molecular simulations for METL

    Python 15 5

  5. ssps ssps Public

    Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

    Julia 14

  6. metl-pretrained metl-pretrained Public

    Pretrained METL models with minimal dependencies

    Python 14

Repositories

Showing 10 of 33 repositories
  • ml4bio Public

    A graphical interface for sklearn classification to introduce machine learning to biologists

    gitter-lab/ml4bio’s past year of commit activity
    Python 11 MIT 3 19 1 Updated Mar 14, 2025
  • benchmarking-structure-based-models Public

    This is a repository of code needed to replicate benchmarks of structure based models in ProteinGym

    gitter-lab/benchmarking-structure-based-models’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 12, 2025
  • metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    gitter-lab/metl’s past year of commit activity
    Python 34 MIT 5 2 0 Updated Mar 10, 2025
  • metl-pretrained Public

    Pretrained METL models with minimal dependencies

    gitter-lab/metl-pretrained’s past year of commit activity
    Python 14 MIT 0 3 1 Updated Feb 27, 2025
  • metl-pub Public

    Supplementary datasets and scripts for the METL manuscript

    gitter-lab/metl-pub’s past year of commit activity
    Jupyter Notebook 5 MIT 1 0 0 Updated Feb 26, 2025
  • metl-sim Public

    High-throughput framework for running molecular simulations for METL

    gitter-lab/metl-sim’s past year of commit activity
    Python 15 MIT 5 3 0 Updated Feb 21, 2025
  • active-learning-drug-discovery Public

    End-to-end active learning pipeline for virtual screening and drug discovery

    gitter-lab/active-learning-drug-discovery’s past year of commit activity
    Jupyter Notebook 5 MIT 0 11 1 Updated Feb 1, 2025
  • nn4dms Public

    Neural networks for deep mutational scanning data

    gitter-lab/nn4dms’s past year of commit activity
    Jupyter Notebook 67 MIT 18 0 0 Updated Nov 13, 2024
  • ChemLML Public

    Chemical Language Model Linker

    gitter-lab/ChemLML’s past year of commit activity
    Python 3 MIT 1 2 0 Updated Nov 6, 2024
  • hiv1-aurkb Public

    Scripts for analyzing HIV-1 producer cell proteomic and phosphoproteomic data

    gitter-lab/hiv1-aurkb’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 31, 2024

Top languages

Loading…

Most used topics

Loading…