Merge pull request #1583 from glotzerlab/release-4.0.1

Release 4.0.1

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.0.0
+current_version = 4.0.1
 commit = False
 tag = False
 parse = ^(?P<major>0|[1-9]\d*)\.(?P<minor>0|[1-9]\d*)\.(?P<patch>0|[1-9]\d*)(?:-(?P<prerelease>(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))(?:\.(?P<number>0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)))?$

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -62,7 +62,7 @@ body:
     attributes:
       label: HOOMD-blue version
       description: What version of HOOMD-blue are you using?
-      placeholder: 4.0.0
+      placeholder: 4.0.1
     validations:
       required: true
   - type: markdown

BUILDING.rst

@@ -145,7 +145,7 @@ Clone using Git_::
 
    $ git clone --recursive https://github.com/glotzerlab/hoomd-blue
 
-Release tarballs are also available as `GitHub release`_ assets: `Download hoomd-v4.0.0.tar.gz`_.
+Release tarballs are also available as `GitHub release`_ assets: `Download hoomd-4.0.1.tar.gz`_.
 
 .. seealso::
 
@@ -158,7 +158,7 @@ Release tarballs are also available as `GitHub release`_ assets: `Download hoomd
     Execute ``git submodule update --init`` to fetch the submodules each time you switch branches
     and the submodules show as modified.
 
-.. _Download hoomd-v4.0.0.tar.gz: https://github.com/glotzerlab/hoomd-blue/releases/download/v4.0.0/hoomd-v4.0.0.tar.gz
+.. _Download hoomd-4.0.1.tar.gz: https://github.com/glotzerlab/hoomd-blue/releases/download/v4.0.1/hoomd-4.0.1.tar.gz
 .. _GitHub release: https://github.com/glotzerlab/hoomd-blue/releases
 .. _git book: https://git-scm.com/book
 .. _Git: https://git-scm.com/

CHANGELOG.rst

@@ -7,6 +7,32 @@ Change Log
 4.x
 ---
 
+4.0.1 (2023-06-27)
+^^^^^^^^^^^^^^^^^^
+
+*Fixed*
+
+* Prevent ``ValueError: signal only works in main thread of the main interpreter`` when importing
+  hoomd in a non-main thread
+  (`#1576 <https://github.com/glotzerlab/hoomd-blue/pull/1576>`__).
+* The recommended conda install commands find the documented version
+  (`#1578 <https://github.com/glotzerlab/hoomd-blue/pull/1578>`__).
+* CMake completes without error when ``HOOMD_GPU_PLATFORM=HIP``
+  (`#1579 <https://github.com/glotzerlab/hoomd-blue/pull/1579>`__).
+* Tests pass with GSD 3.0.0 installed
+  (`#1577 <https://github.com/glotzerlab/hoomd-blue/pull/1577>`__).
+* Provide full CUDA error message when possible
+  (`#1581 <https://github.com/glotzerlab/hoomd-blue/pull/1581>`__).
+* Notice level 4 gives additional GPU initialization details
+  (`#1581 <https://github.com/glotzerlab/hoomd-blue/pull/1581>`__).
+* Show particle out of bounds error messages in exception description
+  (`#1581 <https://github.com/glotzerlab/hoomd-blue/pull/1581>`__).
+
+*Changed*
+
+* Package source in ``hoomd-x.y.z.tar.gz`` (previously ``hoomd-vx.y.z.tar.gz``)
+  (`#1572 <https://github.com/glotzerlab/hoomd-blue/pull/1572>`__).
+
 4.0.0 (2023-06-06)
 ^^^^^^^^^^^^^^^^^^
 

CMakeLists.txt

@@ -14,7 +14,7 @@ add_subdirectory (CMake)
 
 ################################
 ## Version information
-set(HOOMD_VERSION_RAW "4.0.0")
+set(HOOMD_VERSION_RAW "4.0.1")
 string(REGEX MATCH "(.*)\\.(.*)\\.(.*)$" _hoomd_version_match ${HOOMD_VERSION_RAW})
 set(HOOMD_VERSION_MAJOR ${CMAKE_MATCH_1})
 set(HOOMD_VERSION_MINOR ${CMAKE_MATCH_2})

INSTALLING.rst

@@ -24,17 +24,17 @@ Conda package
 **HOOMD-blue** is available on conda-forge_ on the *linux-64*, *osx-64*, and *osx-arm64* platforms.
 Install the ``hoomd`` package from the conda-forge_ channel into a conda environment::
 
-    $ conda install hoomd=4.0.0
+    $ conda install hoomd=4.0.1
 
 ``conda`` auto-detects whether your system has a GPU and attempts to install the appropriate
 package. Override this and force the GPU enabled package installation with::
 
     $ export CONDA_OVERRIDE_CUDA="11.2"
-    $ conda install "hoomd=4.0.0=*gpu*"
+    $ conda install "hoomd=4.0.1=*gpu*"
 
 Similarly, you can force CPU only package installation with::
 
-    $ conda install "hoomd=4.0.0=*cpu*"
+    $ conda install "hoomd=4.0.1=*cpu*"
 
 .. note::
 

hoomd/hpmc/external/user.py

@@ -67,9 +67,9 @@ class CPPExternalPotential(ExternalField):
         Your code *must* return a value.
 
     .. _VectorMath.h: https://github.com/glotzerlab/hoomd-blue/blob/\
-            v4.0.0/hoomd/VectorMath.h
+            v4.0.1/hoomd/VectorMath.h
     .. _BoxDim.h: https://github.com/glotzerlab/hoomd-blue/blob/\
-            v4.0.0/hoomd/BoxDim.h
+            v4.0.1/hoomd/BoxDim.h
 
     Example:
         .. code-block:: python

hoomd/hpmc/pair/user.py

@@ -75,7 +75,7 @@ class CPPPotentialBase(AutotunedObject):
                 HOOMD-blue source code.
 
     .. _VectorMath.h: https://github.com/glotzerlab/hoomd-blue/blob/\
-            v4.0.0/hoomd/VectorMath.h
+            v4.0.1/hoomd/VectorMath.h
 
     Note:
         Your code *must* return a value.

sphinx-doc/conf.py

@@ -63,8 +63,8 @@
 copyright = f'2009-{ year } The Regents of the University of Michigan'
 author = 'The Regents of the University of Michigan'
 
-version = '4.0.0'
-release = '4.0.0'
+version = '4.0.1'
+release = '4.0.1'
 
 language = 'en'