add github action

.github/workflows/CI.yml

@@ -0,0 +1,41 @@
+# https://github.com/Alexander-Barth/NCDatasets.jl/blob/master/.github/workflows/ci.yml
+name: CI
+on:
+  - push
+  - pull_request
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          # - '1.3'
+          - '1'
+          # - 'nightly'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          # - windows-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v2
+      - uses: julia-actions/julia-buildpkg@latest
+      - run: |
+          git config --global user.name Tester
+          git config --global user.email [email protected]
+      - uses: julia-actions/julia-runtest@latest
+        continue-on-error: ${{ matrix.version == 'nightly' }}
+
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          file: lcov.info

.github/workflows/TagBot.yml

@@ -0,0 +1,18 @@
+# https://github.com/JuliaRegistries/TagBot
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          # Edit the following line to reflect the actual name of the GitHub Secret containing your private key
+          ssh: ${{ secrets.DOCUMENTER_KEY }}
+          # ssh: ${{ secrets.NAME_OF_MY_SSH_PRIVATE_KEY_SECRET }}

.gitignore

@@ -1 +1,2 @@
 Manifest.toml
+backup

test/inflation.jl

@@ -1,96 +1,61 @@
 using Test
-
 using Distributions, LinearAlgebra, Statistics
 using EnKF
 
 
 @testset "Additive Inflation" begin
 
-T = AdditiveInflation(10)
-
-@test size(T)==(10,)
-
-
-@test length(T)==10
-
-@test mean(T)== zeros(10)
+  T = AdditiveInflation(10)
 
-A = MvNormal(zeros(10), 1.05*ones(10))
-
-T.α = A
-
-@test var(T) == var(A)
-
-@test var(T) == 1.05^2*ones(10)
+  @test size(T) == (10,)
+  @test length(T) == 10
+  @test mean(T) == zeros(10)
 
+  A = MvNormal(zeros(10), 1.05 * ones(10))
+  T.α = A
+  @test var(T) == var(A)
+  @test var(T) == 1.05^2 * ones(10)
 end
 
 
 @testset "Multiplicative Inflation" begin
+  T = MultiplicativeInflation(10)
+  @test length(T) == 10
+  @test T.β == 1.0
 
-T = MultiplicativeInflation(10)
-
-
-@test length(T)==10
-
-@test T.β == 1.0
-
-
-T.β = 1.05
-
-@test T.β == 1.05
-
+  T.β = 1.05
+  @test T.β == 1.05
 end
 
 
 @testset "MultiAdditive Inflation" begin
+  T = MultiAdditiveInflation(10)
+  @test size(T) == (10,)
+  @test length(T) == 10
+  @test T.β == 1.0
 
-T = MultiAdditiveInflation(10)
-
-@test size(T)== (10,)
-
-@test length(T)==10
-
-@test T.β == 1.0
+  # @test T.α == MvNormal(zeros(10), I)
+  @test mean(T) == zeros(10)
+  @test var(T) == ones(10)
 
-# @test T.α == MvNormal(zeros(10), I)
+  A = MvNormal(zeros(10), 1.05 * ones(10))
 
-@test mean(T) == zeros(10)
+  T.β = 1.05
+  T.α = A
 
-@test var(T) ==  ones(10)
+  @test T.β == 1.05
+  @test mean(T) == zeros(10)
+  @test var(T) == 1.05^2 * ones(10)
 
-A = MvNormal(zeros(10), 1.05*ones(10))
-
-
-T.β = 1.05
-
-T.α = A
-
-@test T.β == 1.05
-
-@test mean(T) == zeros(10)
-
-@test var(T) == 1.05^2*ones(10)
-
-
-A = MvNormal(zeros(10), 1.01*ones(10))
-T = MultiAdditiveInflation(10, 1.01, A)
-
-@test T.β == 1.01
-
-@test mean(T) == zeros(10)
-
-@test var(T) == 1.01^2*ones(10)
+  A = MvNormal(zeros(10), 1.01 * ones(10))
+  T = MultiAdditiveInflation(10, 1.01, A)
 
+  @test T.β == 1.01
+  @test mean(T) == zeros(10)
+  @test var(T) == 1.01^2 * ones(10)
 end
 
 
-
-
-
-
 @testset "State" begin
 
-
-
 end

test/initial.jl

@@ -1,14 +1,9 @@
-using Test
-
 using Distributions, LinearAlgebra, Statistics
-using EnKF
-
+using EnKF, Test
 
 @testset "Initialize" begin
-
-A = MvNormal(zeros(4), I)
-ENS = initialize(10, A)
-
-@test size(ENS) == (10,(4,))
+  A = MvNormal(zeros(4), I)
+  ENS = initialize(10, A)
+  @test size(ENS) == (10, (4,))
 
 end

test/runtests.jl

@@ -1,8 +1,5 @@
-using Test
-
 using Distributions, LinearAlgebra, Statistics
-using EnKF
-
+using EnKF, Test
 
 include("inflation.jl")
 include("state.jl")

test/state.jl

@@ -1,55 +1,44 @@
-using Test
-
 using Distributions, LinearAlgebra, Statistics
-using EnKF
+using EnKF, Test
 
 
 @testset "EnsembleState" begin
+  # Test size and initialize
+  States = [randn(10) for i = 1:4]
+  EnS = EnsembleState(States)
 
-# Test size and initialize
-States = [randn(10) for i = 1:4]
-
-EnS = EnsembleState(States)
-
-@test EnS.S == States
-
-@test size(EnS) == (4, (10,))
-
-@test mean(EnS) - (EnS.S[1]+EnS.S[2]+EnS.S[3]+EnS.S[4])/4 ==zeros(10)
-
-EnS = EnsembleState(4, zeros(5))
-
-@test size(EnS) == (4, (5,))
-
-@test EnS.S[1] == zeros(5)
-
-
-# Test mean and deviation
-A = MvNormal(ones(5), I)
-out = initialize(10, A)
-out̄ = mean(out)
+  @test EnS.S == States
+  @test size(EnS) == (4, (10,))
+  @test mean(EnS) - (EnS.S[1] + EnS.S[2] + EnS.S[3] + EnS.S[4]) / 4 == zeros(10)
 
-out̃1 = out.S[1] .- out̄
-out̃2 = out.S[2] .- out̄
+  EnS = EnsembleState(4, zeros(5))
 
-fluc = EnsembleState(10,zeros(5))
-deviation(fluc, out)
+  @test size(EnS) == (4, (5,))
+  @test EnS.S[1] == zeros(5)
 
-@test fluc.S[1] == out̃1
-@test fluc.S[2] == out̃2
+  # Test mean and deviation
+  A = MvNormal(ones(5), I)
+  out = initialize(10, A)
+  out̄ = mean(out)
 
-# Test addition and substraction
-ENS1 = initialize(10,4)
+  out̃1 = out.S[1] .- out̄
+  out̃2 = out.S[2] .- out̄
 
-ENS2 = initialize(10,4)
+  fluc = EnsembleState(10, zeros(5))
+  deviation(fluc, out)
 
-ENS3 = EnsembleState(10,zeros(4))
+  @test fluc.S[1] == out̃1
+  @test fluc.S[2] == out̃2
 
-ENS3 = ENS1 + ENS2
-@test ENS1.S + ENS2.S == ENS3.S
+  # Test addition and substraction
+  ENS1 = initialize(10, 4)
+  ENS2 = initialize(10, 4)
+  ENS3 = EnsembleState(10, zeros(4))
 
-ENS4 = EnsembleState(10,zeros(4))
+  ENS3 = ENS1 + ENS2
+  @test ENS1.S + ENS2.S == ENS3.S
 
-ENS4 = ENS1- ENS2
-@test ENS1.S - ENS2.S == ENS4.S
+  ENS4 = EnsembleState(10, zeros(4))
+  ENS4 = ENS1 - ENS2
+  @test ENS1.S - ENS2.S == ENS4.S
 end