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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 236 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 1

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 6

Repositories

Showing 10 of 237 repositories
  • ncbi-gene Public
    monarch-initiative/ncbi-gene’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 11, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 236 CC-BY-4.0 53 412 (2 issues need help) 38 Updated Nov 11, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 15 BSD-3-Clause 4 16 0 Updated Nov 10, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 62 5 Updated Nov 10, 2024
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 1 0 9 0 Updated Nov 9, 2024
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 221 (1 issue needs help) 19 Updated Nov 10, 2024
  • oai-monarch-plugin Public

    First pass at a thin wrapper around the Monarch API and ChatGPT plugin

    monarch-initiative/oai-monarch-plugin’s past year of commit activity
    Python 13 MIT 2 6 0 Updated Nov 8, 2024
  • go-ingest Public

    gene ontology ingest from gene association formatted files

    monarch-initiative/go-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 8, 2024
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 606 BSD-3-Clause 76 59 8 Updated Nov 8, 2024
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 48 BSD-3-Clause 4 35 (1 issue needs help) 3 Updated Nov 8, 2024
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