Release 1.1.1

CHANGELOG.md

@@ -3,9 +3,23 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.1.0 - [25 - 02 - 2025]
+## v1.1.1 - [2025-03-11]
 
-Initial release of nf-core/metatdenovo, created with the [nf-core](https://nf-co.re/) template.
+### `Added`
+
+### `Changed`
+
+- [#352](https://github.com/nf-core/metatdenovo/pull/352) - Updated some modules (@erikrikarddaniel).
+
+### `Fixed`
+
+- [#352](https://github.com/nf-core/metatdenovo/pull/352) - Assign less memory to BBNorm to avoid getting killed (@erikrikarddaniel).
+
+### `Dependencies`
+
+### `Deprecated`
+
+## v1.1.0 - [2025-02-25]
 
 ### `Added`
 
@@ -47,6 +61,8 @@ Initial release of nf-core/metatdenovo, created with the [nf-core](https://nf-co
 
 ## v1.0.1 - [2024-04-02]
 
+Initial release of nf-core/metatdenovo, created with the [nf-core](https://nf-co.re/) template.
+
 ### `Fixed`
 
 - [#277](https://github.com/nf-core/metatdenovo/pull/277) - Fix mistake in how `--eukulele_db` parameter is handled. Remove possibility to use a list of dbs in the same run.

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/metatdenovo/releases/tag/1.1.0"
+  This report has been generated by the <a href="https://github.com/nf-core/metatdenovo/releases/tag/1.1.1"
   target="_blank">nf-core/metatdenovo</a> analysis pipeline. For information about
-  how to interpret these results, please see the <a href="https://nf-co.re/metatdenovo/1.1.0/docs/output"
+  how to interpret these results, please see the <a href="https://nf-co.re/metatdenovo/1.1.1/docs/output"
   target="_blank">documentation</a>.
 report_section_order:
   "nf-core-metatdenovo-methods-description":

conf/test_bbnorm.config

@@ -0,0 +1,37 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Nextflow config file for running minimal tests
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Defines input files and everything required to run a fast and simple pipeline test.
+
+    Use as follows:
+        nextflow run nf-core/metatdenovo -profile test,<docker/singularity> --outdir <OUTDIR>
+
+----------------------------------------------------------------------------------------
+*/
+
+process {
+    resourceLimits = [
+        cpus: 4,
+        memory: '15.GB',
+        time: '1.h'
+    ]
+}
+
+params {
+    config_profile_name        = 'Test profile'
+    config_profile_description = 'Minimal test dataset to check pipeline function'
+
+    // Input data
+    input    = params.pipelines_testdata_base_path + 'metatdenovo/samplesheet/samplesheet.csv'
+    hmmfiles = 'https://raw.githubusercontent.com/nf-core/test-datasets/metatdenovo/test_data/PF00317.hmm,https://raw.githubusercontent.com/nf-core/test-datasets/metatdenovo/test_data/PF00848.hmm,https://raw.githubusercontent.com/nf-core/test-datasets/metatdenovo/test_data/PF03477.hmm,https://raw.githubusercontent.com/nf-core/test-datasets/metatdenovo/test_data/PF13597.hmm'
+
+    assembler      = 'megahit'
+    orf_caller     = 'prodigal'
+    bbnorm         = true
+
+    // Other options
+    skip_eukulele  = true
+    skip_eggnog    = true
+    skip_kofamscan = true
+}

modules.json

@@ -7,22 +7,22 @@
                 "nf-core": {
                     "bbmap/align": {
                         "branch": "master",
-                        "git_sha": "3888846f8ee887f5a0f0a730e170a591731bea72",
+                        "git_sha": "dd32ce5a1e5e16d56510768d027c36f0660ee2b8",
                         "installed_by": ["modules"]
                     },
                     "bbmap/bbduk": {
                         "branch": "master",
-                        "git_sha": "3888846f8ee887f5a0f0a730e170a591731bea72",
+                        "git_sha": "dd32ce5a1e5e16d56510768d027c36f0660ee2b8",
                         "installed_by": ["modules"]
                     },
                     "bbmap/bbnorm": {
                         "branch": "master",
-                        "git_sha": "3888846f8ee887f5a0f0a730e170a591731bea72",
+                        "git_sha": "29bb0c2f7e06b1945cdd2f2f324e6baa30d1c4e7",
                         "installed_by": ["modules"]
                     },
                     "bbmap/index": {
                         "branch": "master",
-                        "git_sha": "3888846f8ee887f5a0f0a730e170a591731bea72",
+                        "git_sha": "dd32ce5a1e5e16d56510768d027c36f0660ee2b8",
                         "installed_by": ["modules"]
                     },
                     "cat/cat": {
@@ -32,7 +32,7 @@
                     },
                     "cat/fastq": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "c03f4019225fce21c11f194ff32eca396963f305",
                         "installed_by": ["modules"]
                     },
                     "fastqc": {