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54 Open 587 Closed
54 Open 587 Closed
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Issues list

null path java error with all qc preprocessing skipping options enabled with revision 3.15.0 bug Something isn't working
#1387 opened Sep 17, 2024 by jos4uke
RNAseq-3.14.0 Pipeline fails with aligner star_rsem bug Something isn't working
#1375 opened Sep 6, 2024 by GerardTromp
4
Option to keep chimeric reads after UMI deduplication enhancement
#1373 opened Sep 4, 2024 by siddharthab 3.16.0
1
Hyphenated sample names causes downstream error bug Something isn't working
#1364 opened Aug 28, 2024 by mniederhuber
1
Improve qualimap execution time enhancement
#1356 opened Aug 20, 2024 by PramodRaoB 3.16.0
2
SortMeRNA database version enhancement
#1354 opened Aug 16, 2024 by wzheng0520 3.16.0
3
Sanity-check the sample names before committing to any data processing enhancement
#1349 opened Aug 2, 2024 by fruce-ki
NFCORE_RNASEQ:RNASEQ:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (SRR15731653)` terminated with an error exit status (1) bug Something isn't working
#1348 opened Jul 25, 2024 by Dokmen
1
To use STAR module, how should the GTF file look like
#1347 opened Jul 24, 2024 by huma1995
Updating picard to 3.2.0 fails pipeline level tests
#1346 opened Jul 22, 2024 by maxulysse
1
2
Accept uncompressed files, for instance fastq enhancement
#1343 opened Jul 17, 2024 by TheWizier
1
NFCORE_RNASEQ takes values from global scope
#1339 opened Jul 9, 2024 by adamrtalbot
Stubs all the way down enhancement
#1338 opened Jul 9, 2024 by maxulysse
1
Add support to use the pipeline with NGS generated using zymo research kit enhancement
#1337 opened Jul 6, 2024 by Ahmedalaraby20
3
Add tximport for RSEM outputs enhancement
#1320 opened Jun 18, 2024 by olgabot
pipeline no longer compatible with newest STAR 2.7.11b bug Something isn't working
#1316 opened Jun 12, 2024 by gvogler
Error running process NFCORE_RNASEQ:RNASEQ:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION bug Something isn't working
#1315 opened Jun 12, 2024 by charlesdavid
External Argument Documentation enhancement
#1313 opened Jun 5, 2024 by charlesdavid
3
Please add gene names to merged rsem output files enhancement
#1300 opened May 14, 2024 by ianyfchang
Replace nf-validation with nf-schema enhancement
#1290 opened Apr 30, 2024 by adamrtalbot 3.16.0
1
Validate FASTQs prior to running pipeline enhancement
#1281 opened Apr 10, 2024 by adamrtalbot 3.16.0
Improve/add UMI deduplication metrics awaiting-response-community enhancement
#1277 opened Apr 2, 2024 by ppericard 3.16.0
@MatthiasZepper
5
Add additional FastQC step after optional BBSplit and/or SortMeRNA awaiting-response-developers enhancement
#1276 opened Mar 28, 2024 by ppericard 3.16.0
Two Bigwig files per sample are generated representing each strand awaiting-response-community enhancement
#1275 opened Mar 26, 2024 by drimran87 3.16.0
3
Qualimap assigns more reads to exonic regions than total reads in the sample awaiting-response-developers documentation
#1273 opened Mar 21, 2024 by ctuni 3.16.0
ProTip! no:milestone will show everything without a milestone.