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pipeline no longer compatible with newest STAR 2.7.11b #1316

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gvogler opened this issue Jun 12, 2024 · 1 comment · Fixed by #1423
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pipeline no longer compatible with newest STAR 2.7.11b #1316

gvogler opened this issue Jun 12, 2024 · 1 comment · Fixed by #1423
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@gvogler
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gvogler commented Jun 12, 2024

Description of the bug

STAR 2.7.11b --- 2024/01/24 ::: Minor in one parameter. Latest
Replaced --quantTranscriptomeBan parameter with --quantTranscriptomeSAMoutput

This breaks the rnaseq workflow since it is missing the renamed parameter.

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System information

N E X T F L O W ~ version 24.04.2
nf-core/rnaseq v3.14.0-gb89fac3
@gvogler gvogler added the bug Something isn't working label Jun 12, 2024
@pinin4fjords pinin4fjords linked a pull request Oct 21, 2024 that will close this issue
Bump STAR version for version with ARM Conda build #1423
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Solved in #1423

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Bump STAR version for version with ARM Conda build nf-core/rnaseq
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