Skip to content

Merge pull request #3458 from nf-core/nh13-patch-1 #8662

Merge pull request #3458 from nf-core/nh13-patch-1

Merge pull request #3458 from nf-core/nh13-patch-1 #8662

Triggered via push February 20, 2025 08:04
Status Cancelled
Total duration 3m 21s
Artifacts 45

pytest.yml

on: push
Matrix: setup
Get test file matrix
3s
Get test file matrix
Matrix: test
coverage
0s
coverage
Fit to window
Zoom out
Zoom in

Annotations

29 errors and 59 warnings
Run components/test_components_generate_snapshot.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_install.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_install.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_list.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_list.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_update.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_update.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run modules/test_create.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run test_utils.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run modules/test_create.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_utils.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
Canceling since a higher priority waiting request for 'Python tests-refs/heads/dev' exists
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
The operation was canceled.
Run test_components.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_snapshot_test.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_if_empty_null.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_local_component_structure.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_cli.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_pipelines.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_modules.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_info.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_install.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_update.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size Digest
coverage_components__test_components_snapshot_test.py
5.63 KB
sha256:2fc197efe1f9314515539c6c0b65bf5a4b42c1f232feaaa4d88f5db6e647d669
coverage_components__test_components_utils.py
5.29 KB
sha256:1b1d226722832d7ca692f64bc5e122b0e32ba9c4472341b25c6f793264fe8a59
coverage_modules__test_bump_versions.py
6 KB
sha256:f4cf3e7bdb4d1f2fa2e514e85de0109d5658b9bdd1b726d21f443980f6154084
coverage_modules__test_info.py
6.08 KB
sha256:c46fa50382ac68b06ff1380d0b3008c32481ada0d5a8beba97345cf644b5377e
coverage_modules__test_modules_utils.py
5.94 KB
sha256:ba95bf971375a9d9b0cfec8a0d22ade6dd56e3af4bea3e9d429e39b0d5f7dffc
coverage_modules__test_remove.py
6.02 KB
sha256:d4b14e516e961ef47a797d451beef7a8d25adba3199e8f40ad6468f1c7591ad8
coverage_pipelines__lint__test_actions_awsfulltest.py
6.79 KB
sha256:f26c383feace58c8c3d6f492f81b05bd044ce727b6400fcc2a8b925f7dc5e579
coverage_pipelines__lint__test_actions_awstest.py
6.79 KB
sha256:fce5eb9cf1d43e2d48424a666f1aa03a2358e631dcbf852ba74f35cd17b25331
coverage_pipelines__lint__test_actions_ci.py
6.79 KB
sha256:1690fd5588d5ff9a74f896cb07845917d35783fe185b4d976ff17860f37c5631
coverage_pipelines__lint__test_actions_schema_validation.py
6.79 KB
sha256:3d836ec443e6ae8a0c7fed840c5d23a8b1a6e2a164e1c41a98ef6adaa5afe95c
coverage_pipelines__lint__test_configs.py
6.79 KB
sha256:52f24ccf0038b93a262de271d356255e64456dbde24bbfecab2391751e8dd809
coverage_pipelines__lint__test_files_exist.py
6.81 KB
sha256:81ca05d83d3af0584b6cd0549ce68d25aa348af22d19fa903b44d926e6023fdf
coverage_pipelines__lint__test_files_unchanged.py
6.81 KB
sha256:4079eae237e72f514943d0ed17cbd07dd7d4e39d471361f1ff011f77ed42c903
coverage_pipelines__lint__test_if_empty_null.py
6.79 KB
sha256:d806c6a98abfe989ab9c60e4cf1ade6ab94a74141f6090c1181fee50c7892374
coverage_pipelines__lint__test_local_component_structure.py
6.79 KB
sha256:f0e96b34f9b29f65cda3fbf70ea7c6f33a243f0bf951bce892abad84d2a689a4
coverage_pipelines__lint__test_merge_markers.py
6.79 KB
sha256:5f5fe5f991ab944dc79f688ac54a5a3fe8bcdb4f489858e39f1bd02d41cfabad
coverage_pipelines__lint__test_modules_json.py
6.79 KB
sha256:f2130cf024aa673cb5ea2f6e5804833dfdd476702a15052e60adcb77a0f3f9c9
coverage_pipelines__lint__test_multiqc_config.py
6.84 KB
sha256:5dd452b45586df2ca9c4459621d279217199571562267c735f8030012c11fa6f
coverage_pipelines__lint__test_nextflow_config.py
6.84 KB
sha256:9c9ab6bcf55a3e1abd0a5fbb0d58d7adb60e33b50efc68c2f2032c542fb0950b
coverage_pipelines__lint__test_nfcore_yml.py
6.79 KB
sha256:828408854f79f1e9a7136300e3f92fa96c7f9a2d6ed616837d2e1ab84a40d307
coverage_pipelines__lint__test_plugin_includes.py
6.78 KB
sha256:70375b230fbb8265fa000e77a60240f0a224570250bfe3e769f1422406efae43
coverage_pipelines__lint__test_template_strings.py
7.11 KB
sha256:85e7a846c1fd5050f53cd40289000caf7c2b8d3ec7795cf79c6aeb7fb1ced0e5
coverage_pipelines__lint__test_version_consistency.py
6.85 KB
sha256:6ae890795a81bc76584a18ae60a68300a5a43ddf8c77a393828b81e4062e3cd1
coverage_pipelines__test_bump_version.py
5.47 KB
sha256:4a9923dcc73b8cbaa58e846a9917b0287b655dfca1b91081d4e943f30c2112f3
coverage_pipelines__test_create.py
5.41 KB
sha256:3a6ec8c7eb358d818623f4d58fdf993001a566a673bec0e91a0b3b18accdaffd
coverage_pipelines__test_create_app.py
5.43 KB
sha256:01cf37ca1f1658ba2bb170ca5166a52d0fce287a244374fafebabea4d61d4613
coverage_pipelines__test_create_logo.py
5.41 KB
sha256:da541fa9a87161fa8d7e19a59c6f03dd5e46375e06aac0fa524bea71aacc7204
coverage_pipelines__test_download.py
5.8 KB
sha256:8bf6f0298b895a07ff3315c33ee1781e79db05a11cd623beabffafaf6ef461af
coverage_pipelines__test_lint.py
7.15 KB
sha256:e436fa587e3753280dd64e648981c56126f64c4f9250e43ccecf767a6caf1661
coverage_pipelines__test_list.py
5.26 KB
sha256:083a893ef3074c08948922c7524a26f014892492acc3518cad42d8bafb863e44
coverage_pipelines__test_params_file.py
5.5 KB
sha256:8412f930d392665102d5feb0122c1b383e5c2a9ba1887fce05d45f47301224e9
coverage_pipelines__test_refgenie.py
5.26 KB
sha256:bbbaca1fafeadfd68d8ce5af57c744b1c6c769dd26d6226bd7cc96495a73304f
coverage_pipelines__test_rocrate.py
5.47 KB
sha256:4f911488f765d43460180b7187674bee97cc7f55eefc43a140497f251681eeee
coverage_subworkflows__test_create.py
6.85 KB
sha256:40bef9dd0669f7ecd8bab1daaa5ca8e78b8c02102f4d3510d5d263ece1103dec
coverage_subworkflows__test_info.py
6.95 KB
sha256:8d59000d1753c41c1d68b037e2df55571ebc4e4089b730615d619ca818aef6f0
coverage_subworkflows__test_list.py
6.94 KB
sha256:86f39290243f2315baead3900977f7f01b71db55c3e5b358f70fd020d36d17a6
coverage_subworkflows__test_patch.py
7.05 KB
sha256:a6f77b3f43d3a73195057f06c73670e37a77e61fc27c0d48e3f8851e2368852b
coverage_subworkflows__test_remove.py
6.92 KB
sha256:177b954a88169f10c4e80aa12afce514fb56f0bd5f51b3bd5ebeee998f447e49
coverage_test_cli.py
7.16 KB
sha256:bfebb7eb151682f1d220e0b434db00d2321cae91e8cb551ac5810271a19bc6a0
coverage_test_components.py
5.24 KB
sha256:8347ab9198764c50ed34cef7284a7dc569e4d6a90465089025448b8120a1b71e
coverage_test_lint_utils.py
5.23 KB
sha256:cd5b5a6b07b135d3f156f611041b4eb36e6f26a18b1ee57106e5784c0112bc9f
coverage_test_modules.py
5.93 KB
sha256:fb8fd5f32eaaaafdab4004c769359d6a93f03ef48d07e265790f27f63604d48b
coverage_test_pipelines.py
5.24 KB
sha256:98a10e44e51e96438826da5da895baa2116f922fdb0103e4f040078e033957b1
coverage_test_subworkflows.py
6.61 KB
sha256:fe84296e64ba779c71d0c669c3e6fc6629f176382bfe1ff61da90ebf4d1024ca
coverage_test_test_utils.py
5.24 KB
sha256:8febaee55cc825cf77bc7ab314da2e387e944b9503f2170b4307514ae3f512a7