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Fix pipeline linting nf-core component behaviour #8725

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Fix pipeline linting nf-core component behaviour

Fix pipeline linting nf-core component behaviour #8725

Run time

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Job Run time
Get test file matrix
4s
setup (3.8, ubuntu-latest)
1s
setup (3.12, ubuntu-latest)
1s
setup (3.8, ubuntu-20.04)
1s
Run test_utils.py with Python 3.8 on ubuntu-20.04
3m 9s
Run test_test_utils.py with Python 3.8 on ubuntu-20.04
1m 35s
Run modules/test_install.py with Python 3.8 on ubuntu-20.04
3m 51s
Run modules/test_create.py with Python 3.8 on ubuntu-20.04
3m 16s
Run modules/test_remove.py with Python 3.8 on ubuntu-20.04
2m 27s
Run modules/test_lint.py with Python 3.8 on ubuntu-20.04
9m 14s
Run modules/test_list.py with Python 3.8 on ubuntu-20.04
4m 2s
Run modules/test_modules_utils.py with Python 3.8 on ubuntu-20.04
2m 13s
Run modules/test_patch.py with Python 3.8 on ubuntu-20.04
4m 48s
Run modules/test_info.py with Python 3.8 on ubuntu-20.04
3m 16s
Run modules/test_update.py with Python 3.8 on ubuntu-20.04
5m 45s
Run modules/test_modules_json.py with Python 3.8 on ubuntu-20.04
4m 29s
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-20.04
2m 58s
Run test_subworkflows.py with Python 3.8 on ubuntu-20.04
1m 29s
Run test_cli.py with Python 3.8 on ubuntu-20.04
1m 34s
Run components/test_components_generate_snapshot.py with Python 3.8 on ubuntu-20.04
10m 4s
Run components/test_components_snapshot_test.py with Python 3.8 on ubuntu-20.04
1m 33s
Run components/test_components_utils.py with Python 3.8 on ubuntu-20.04
1m 17s
Run test_modules.py with Python 3.8 on ubuntu-20.04
1m 47s
Run test_pipelines.py with Python 3.8 on ubuntu-20.04
1m 28s
Run test_lint_utils.py with Python 3.8 on ubuntu-20.04
1m 24s
Run pipelines/test_download.py with Python 3.8 on ubuntu-20.04
1m 43s
Run pipelines/test_create_app.py with Python 3.8 on ubuntu-20.04
2m 47s
Run pipelines/test_sync.py with Python 3.8 on ubuntu-20.04
3m 21s
Run pipelines/test_create.py with Python 3.8 on ubuntu-20.04
1m 47s
Run pipelines/test_params_file.py with Python 3.8 on ubuntu-20.04
1m 50s
Run pipelines/test_rocrate.py with Python 3.8 on ubuntu-20.04
2m 1s
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-20.04
2m 25s
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-20.04
3m 15s
Run pipelines/lint/test_if_empty_null.py with Python 3.8 on ubuntu-20.04
2m 55s
Run pipelines/lint/test_local_component_structure.py with Python 3.8 on ubuntu-20.04
1m 38s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-20.04
1m 48s
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-20.04
1m 46s
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-20.04
1m 41s
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-20.04
2m 57s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-20.04
1m 39s
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-20.04
1m 52s
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-20.04
1m 43s
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-20.04
1m 37s
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-20.04
1m 26s
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-20.04
1m 58s
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-20.04
1m 46s
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-20.04
2m 9s
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-20.04
1m 48s
Run pipelines/test_lint.py with Python 3.8 on ubuntu-20.04
2m 14s
Run pipelines/test_list.py with Python 3.8 on ubuntu-20.04
1m 22s
Run pipelines/test_launch.py with Python 3.8 on ubuntu-20.04
3m 35s
Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-20.04
3m 15s
Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-20.04
2m 12s
Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-20.04
2m 53s
Run pipelines/test_schema.py with Python 3.8 on ubuntu-20.04
3m 34s
Run subworkflows/test_install.py with Python 3.8 on ubuntu-20.04
3m 55s
Run subworkflows/test_create.py with Python 3.8 on ubuntu-20.04
2m 15s
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-20.04
2m 46s
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-20.04
5m 51s
Run subworkflows/test_list.py with Python 3.8 on ubuntu-20.04
2m 26s
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-20.04
2m 56s
Run subworkflows/test_info.py with Python 3.8 on ubuntu-20.04
2m 20s
Run subworkflows/test_update.py with Python 3.8 on ubuntu-20.04
10m 1s
Run test_components.py with Python 3.8 on ubuntu-20.04
1m 23s
coverage
53s
2h 53m 29s