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Fix pipeline linting nf-core component behaviour #8734

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Fix pipeline linting nf-core component behaviour

Fix pipeline linting nf-core component behaviour #8734

Run time

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Job Run time
setup (3.8, ubuntu-latest)
1s
Get test file matrix
2s
setup (3.12, ubuntu-latest)
1s
setup (3.8, ubuntu-20.04)
1s
Run test_utils.py with Python 3.12 on ubuntu-latest
2m 49s
Run test_test_utils.py with Python 3.12 on ubuntu-latest
51s
Run modules/test_install.py with Python 3.12 on ubuntu-latest
3m 30s
Run modules/test_create.py with Python 3.12 on ubuntu-latest
3m 2s
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
2m 18s
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
9m 33s
Run modules/test_list.py with Python 3.12 on ubuntu-latest
3m 53s
Run modules/test_modules_utils.py with Python 3.12 on ubuntu-latest
1m 57s
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
3m 34s
Run modules/test_info.py with Python 3.12 on ubuntu-latest
2m 27s
Run modules/test_update.py with Python 3.12 on ubuntu-latest
5m 54s
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
4m 31s
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
2m 24s
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
54s
Run test_cli.py with Python 3.12 on ubuntu-latest
50s
Run components/test_components_generate_snapshot.py with Python 3.12 on ubuntu-latest
12m 56s
Run components/test_components_snapshot_test.py with Python 3.12 on ubuntu-latest
59s
Run components/test_components_utils.py with Python 3.12 on ubuntu-latest
58s
Run test_modules.py with Python 3.12 on ubuntu-latest
1m 22s
Run test_pipelines.py with Python 3.12 on ubuntu-latest
48s
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
1m 1s
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
1m 28s
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
2m 8s
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
2m 58s
Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
1m 11s
Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
1m 16s
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
1m 37s
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
2m 9s
Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
59s
Run pipelines/lint/test_if_empty_null.py with Python 3.12 on ubuntu-latest
1m 18s
Run pipelines/lint/test_local_component_structure.py with Python 3.12 on ubuntu-latest
1m 8s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
1m 24s
Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
1m 17s
Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
1m 4s
Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
1m 16s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
1m 10s
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
1m 20s
Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
1m 5s
Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
1m 3s
Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
1m 14s
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
1m 42s
Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
1m 19s
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
1m 36s
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
1m 23s
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
1m 29s
Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
1m 5s
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
3m 35s
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
1m 33s
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
1m 44s
Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
1m 22s
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
3m 4s
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
3m 39s
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
2m 3s
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
2m 37s
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
5m 58s
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
1m 54s
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
2m 42s
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
2m 17s
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
9m 30s
Run test_components.py with Python 3.12 on ubuntu-latest
56s
coverage
1s
2h 25m 10s