Fix multiple workflow in subworkflow #3571

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1 error and 1 warning

Set up job

go to working directory

Check out source-code repository

Set up Python 3.12

Install python dependencies

26s

Install Nextflow

Create template skip ci

create a pipeline from the template ci

run the pipeline

1m 14s

remove results folder

nf-core pipelines sync

Run pre-commit

28s

remove TODO

uncomment include config

replace zenodo.XXXXXX

add empty ro-crate file

nf-core pipelines lint

run pre-commit

nf-core pipelines bump-version

nf-core pipelines lint in release mode

Tar files

Upload log file artifact

Cleanup work directory

Post Install Nextflow

Post Set up Python 3.12

Post Check out source-code repository

Complete job