Skip to content

@CBI-PITT Center for Biologic Imaging, Univerity of Pittsburgh

Change the repository type filter

All

    Repositories list

    21 repositories

    • flask_file_browser

      Public
      file browser for BrAinPI
      CSS
      •1•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • olympus_vs200

      Public
      Python
      •1•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • BrAinPI

      Public
      Development of API for access to BIL datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•1•1•Updated Feb 11, 2025Feb 11, 2025

    • zarr_stores

      Public
      A repository for development of custom zarr storage classes
      Python
      •0•3•0•0•Updated Feb 5, 2025Feb 5, 2025

    • micro_status

      Public
      Checking RSCM imaging and processing status
      Python
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • virtualhe_rust

      Public
      Virtual H&E image from fluorescent microscopy written in rust
      Rust
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • virtualhe_py

      Public
      Virtual H&E image from fluorescent microscopy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • mesoSPIM-control

      Public
      Image acquisition software for mesoSPIM light-sheet microscopes.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • ImarisFileConverter_wine

      Public
      Imaris File Converter for wine on Linux
      0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • windows

      Public
      Windows inside a Docker container.
      Shell
      •
      MIT License
      •2.3k•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • holis_mri_images

      Public
      0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • holis_tools

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • PSFmodels

      Public
      Python bindings for scalar and vectorial models of the 3D microscope point spread function.
      C++
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated May 20, 2024May 20, 2024

    • stack_to_multiscale_ngff

      Public
      Convert an image stack to multiscale OME-NGFF Zarr
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•1•0•Updated Sep 18, 2023Sep 18, 2023

    • compression_tools

      Public
      Repository for tools to assist in compressing data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 11, 2023Aug 11, 2023

    • napari-imaris-loader

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•6•2•1•Updated Aug 8, 2023Aug 8, 2023

    • holis_images_public

      Public
      0•0•0•0•Updated Apr 20, 2023Apr 20, 2023

    • imaris_ims_file_reader

      Public
      Imaris file format reader
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•8•2•1•Updated Sep 9, 2022Sep 9, 2022

    • weave

      Public
      A file format for storage of petascale image data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 8, 2022Feb 8, 2022

    • X-CLARITY-3D-Printed-Sample-Holder

      Public
      3D Printed sample holders for the X-CLARITY ETC Chamber
      0•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • tiff_utils

      Public
      An easy way to juggle reading, writing and managing tags in tiff images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 16, 2021Nov 16, 2021