Sugarscape Chapter 3- Draft Pull Request

examples/sugarscape_cg/sugar-map.txt

@@ -0,0 +1,50 @@
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 2 2 2 2 2 2 2 2
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2
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+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 2 2 2 2 2 2 3 3 3 3 3 3 3 4 4 4 4 3 3 3 3 3 3 3 2 2
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 2 2 2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3
+0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3
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+0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3
+0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3
+0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2
+0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2
+1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 4 4 4 4 3 3 3 3 3 3 3 2 2
+1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2
+1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2
+1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2
+1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2
+1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2
+1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1
+1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1
+1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1
+1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1
+1 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1
+2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1
+2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1
+2 2 2 2 2 2 3 3 3 3 3 3 3 4 4 4 4 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1
+2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 0 0 0
+2 2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0
+2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0
+2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0
+2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0
+2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0
+2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2 2 2 2 2 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 2 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2 2 2 2 2 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 2 2 3 3 3 3 3 3 3 4 4 4 4 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

examples/sugarscape_cg/sugarscape_cg/model.py

@@ -47,11 +47,9 @@ def __init__(self, width=50, height=50, initial_population=100):
         import numpy as np
 
         sugar_distribution = np.genfromtxt(Path(__file__).parent / "sugar-map.txt")
-        agent_id = 0
         for _, (x, y) in self.grid.coord_iter():
             max_sugar = sugar_distribution[x, y]
-            sugar = Sugar(agent_id, (x, y), self, max_sugar)
-            agent_id += 1
+            sugar = Sugar(self.next_id(), (x, y), self, max_sugar)
             self.grid.place_agent(sugar, (x, y))
             self.schedule.add(sugar)
 
@@ -62,8 +60,9 @@ def __init__(self, width=50, height=50, initial_population=100):
             sugar = self.random.randrange(6, 25)
             metabolism = self.random.randrange(2, 4)
             vision = self.random.randrange(1, 6)
-            ssa = SsAgent(agent_id, (x, y), self, False, sugar, metabolism, vision)
-            agent_id += 1
+            ssa = SsAgent(
+                self.next_id(), (x, y), self, False, sugar, metabolism, vision
+            )
             self.grid.place_agent(ssa, (x, y))
             self.schedule.add(ssa)
 

examples/sugarscape_scc/README.md

@@ -0,0 +1,43 @@
+# Sugarscape: Sex, Culture, and Conflict : The Emergence of History
+
+## Summary
+
+This is a work-in-progress implementation of Chapter 3 from *Growing Artificial Societies: Social Science from the Bottom Up.*, adding mechanics such as sexual reproduction, cultural exchange and combat.
+
+This model greatly increases the complexity of interactions between agents, following on from Chapter 2's model.
+
+## Mechanics Introduced
+
+### Sexual Reproduction
+
+We assign agents a trait, **Fertility**, according to which they can perform Agent Rule **S**:
+- Select a neighbour at random
+- If the neighbor is fertile and of the opposite sex and at least one of the agents has an empty neighboring site (for the baby), then a child is born
+- Repeat for all neighbors
+
+###  Cultural Processes (WIP)
+
+### Combat (WIP)
+
+This model demonstrates visualisation of agent attributes.
+## How to Run
+
+To run the model interactively, run ``mesa runserver`` in this directory. e.g.
+
+`$ mesa runserver`
+
+Then open your browser to [http://127.0.0.1:8521/](http://127.0.0.1:8521/) and press **Reset**, then **Run**.
+
+## Files
+
+* `sugarscape_scc/agents.py`: Adds chapter-specific mechanics to `sugarscape_cg/agent.py`
+* `sugarscape_scc/server.py`: Sets up the interactive server with charts visualising data.
+* `sugarscape_scc/model.py`: Defines the Sugarscape model itself
+* `run.py`: Launches a model visualization server.
+
+## Further Reading
+
+Epstein, J. M., & Axtell, R. (n.d.). *Growing Artificial Societies*: Social science from the bottom up. Brookings Institution Press, Chapter 3.
+
+
+The ant sprite is taken from https://openclipart.org/detail/229519/ant-silhouette, with CC0 1.0 license.

examples/sugarscape_scc/run.py

@@ -0,0 +1,3 @@
+from sugarscape_scc.server import server
+
+server.launch(open_browser=True)

examples/sugarscape_scc/sugarscape_scc/agents.py

@@ -0,0 +1,104 @@
+from mesa_models.sugarscape_cg.agents import SsAgent
+
+
+class SsAgent3(SsAgent):
+    def __init__(
+        self,
+        unique_id,
+        pos,
+        model,
+        moore=False,
+        sugar=0,
+        metabolism=0,
+        vision=0,
+        fertile=40,
+    ):
+        # first generation agents are randomly assigned metabolism and vision,
+        # children get a contribution from their parents
+
+        super().__init__(unique_id, pos, model, moore, sugar, metabolism, vision)
+        self.age = 0
+        self.fertile = fertile
+        self.age_of_death = self.random.randrange(60, 100)
+        self.gender = self.random.randint(0, 1)  # 0 is FEMALE, 1 is MALE
+        self.children = []  # maybe stores the IDs of the kids of the agent?
+        self.age_of_death = self.random.randrange(60, 100)
+        self.gender = self.random.randint(0, 1)  # 0 is FEMALE, 1 is MALE
+
+    def is_fertile(self) -> bool:
+        # reduced some of the randomness in determining when agents can no longer reproduce
+        if self.age < 15:
+            return False
+
+        if (self.gender == 1) and (self.age > 60):
+            return False
+
+        if (self.gender == 0) and (self.age > 50):
+            return False
+        return self.sugar < self.fertile
+
+      def sex(self):
+        potential_mates = [
+            i
+            for i in self.model.grid.get_neighbors(
+                self.pos, self.moore, include_center=False, radius=self.vision
+            )
+            if (
+                (type(i) is SsAgent)
+                and (i.is_fertile() is True)
+                and (i.gender != self.gender)
+            )
+        ]
+
+        # check for empty spots next to self
+        empty_cells = [
+            i
+            for i in self.model.grid.get_neighborhood(
+                self.pos, self.moore, include_center=False, radius=1
+            )
+            if not self.is_occupied(i)
+        ]
+        self.random.shuffle(empty_cells)
+        for neighbor in potential_mates:
+            if self.sugar < self.fertile:
+                break
+
+            if len(empty_cells) == 0:
+                continue  # placeholder
+                # check for first empty spot next to neighbor
+                # if none found iterate to next neighbor
+            endowment = (self.sugar / 2) + (neighbor.sugar / 2)
+            self.sugar -= self.sugar / 2
+            neighbor.sugar -= neighbor.sugar / 2
+            ssa = SsAgent(
+                self.model.next_id(),
+                empty_cells[0],
+                self.model,
+                False,
+                sugar=endowment,
+                metabolism=self.random.choice([neighbor.metabolism, self.metabolism]),
+                vision=self.random.choice([neighbor.vision, self.vision]),
+            )
+            self.model.grid.place_agent(ssa, empty_cells[0])
+            self.model.schedule.add(ssa)
+
+        # iterate through list
+
+    def inheritance(self):
+        for i in self.children:
+            i.sugar += self.sugar / len(self.children)
+
+
+    def step(self):
+        self.move()
+        self.eat()
+        if self.is_fertile() is True:
+            self.sex()  # reproduction condition
+
+        if (self.sugar <= 0) or (self.age == self.age_of_death):
+            self.inheritance()
+            self.model.grid.remove_agent(self)
+            self.model.schedule.remove(self)  # death conditions
+        self.age += 1
+
+

examples/sugarscape_scc/sugarscape_scc/model.py

@@ -0,0 +1,34 @@
+"""
+Sugarscape: Sex, Culture & Conflict.
+
+TODO
+1. calculate gini coeff
+2. create trigger buttons that switch factors such as inheritance on/off.
+"""
+
+
+import mesa
+from mesa_models.sugarscape_cg.model import SugarscapeCg
+
+from .agents import SsAgent3 as SsAgent
+
+
+class SugarscapeScc(SugarscapeCg):
+    """
+    Sugarscape 3 SCC
+    """
+
+    verbose = True  # Print-monitoring
+
+    def __init__(self, width=50, height=50, initial_population=100):
+        """
+        Args:
+            initial_population: Number of population to start with
+        """
+        super().__init__(width, height, initial_population)
+        # ADD agent reporters to the datacollector
+
+        self.datacollector = mesa.DataCollector(
+            model_reporters={"SsAgent": lambda m: m.schedule.get_type_count(SsAgent)},
+            agent_reporters={"age": "age"},
+        )

examples/sugarscape_scc/sugarscape_scc/server.py

@@ -0,0 +1,42 @@
+import mesa
+from mesa_models.sugarscape_cg.agents import Sugar
+
+# TODO implement age graph as well
+from .agents import SsAgent3 as SsAgent
+
+from .model import SugarscapeScc
+
+color_dic = {4: "#005C00", 3: "#008300", 2: "#00AA00", 1: "#00F800"}
+
+
+def SsAgent_portrayal(agent):
+    if agent is None:
+        return
+
+    if type(agent) is SsAgent:
+        return {"Shape": "sugarscape_scc/resources/ant.png", "scale": 0.9, "Layer": 1}
+
+    elif type(agent) is Sugar:
+        color = color_dic[agent.amount] if agent.amount != 0 else "#D6F5D6"
+        return {
+            "Color": color,
+            "Shape": "rect",
+            "Filled": "true",
+            "Layer": 0,
+            "w": 1,
+            "h": 1,
+        }
+
+    return {}
+
+
+canvas_element = mesa.visualization.CanvasGrid(SsAgent_portrayal, 50, 50, 500, 500)
+chart_element = mesa.visualization.ChartModule(
+    [{"Label": "SsAgent", "Color": "#AA0000"}], data_collector_name="datacollector"
+)
+bar_graph = mesa.visualization.BarChartModule(
+    [{"Label": "age", "Color": "#AAAAAA"}], data_collector_name="datacollector"
+)
+server = mesa.visualization.ModularServer(
+    SugarscapeScc, [canvas_element, chart_element, bar_graph], "Sugarscape 3 SCC"
+)

examples/sugarscape_scc/sugarscape_scc/sugar-map.txt

@@ -0,0 +1,50 @@
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 2 2 2 2 2 2 2 2
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+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3 3 3 3 4 4 4 4 4 4 4 4 3 3 3 3 3 3 2
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+2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

gis/agents_and_networks/scripts/run.py

@@ -2,6 +2,7 @@
 
 import mesa
 import mesa_geo as mg
+
 from src.model.model import AgentsAndNetworks
 from src.visualization.server import (
     agent_draw,