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Reactome

A curated pathway database

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  1. reactome2py reactome2py Public

    python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

    Python 28 9

  2. ReactomeGSA ReactomeGSA Public

    R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

    R 23 4

  3. graph-core graph-core Public

    Models the Reactome knowledgebase into a interconnected graph

    Java 17 7

  4. pwp-browser pwp-browser Public

    A tool for visualising and interacting with pathways data

    Java 10 7

  5. container container Public

    🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧

    Perl 9 4

  6. content-service content-service Public

    The new Reactome REST API to access the data

    Java 9 5

Repositories

Showing 10 of 129 repositories
  • release-update-stable-ids Public

    Data-release-pipeline: Updates stable identifiers of manually curated instances

    reactome/release-update-stable-ids’s past year of commit activity
    Java 0 0 1 1 Updated Feb 14, 2025
  • release-update-dois Public

    Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)

    reactome/release-update-dois’s past year of commit activity
    Java 1 0 0 0 Updated Feb 14, 2025
  • graph-core Public

    Models the Reactome knowledgebase into a interconnected graph

    reactome/graph-core’s past year of commit activity
    Java 17 7 2 1 Updated Feb 14, 2025
  • content-service Public

    The new Reactome REST API to access the data

    reactome/content-service’s past year of commit activity
    Java 9 5 1 1 Updated Feb 14, 2025
  • data-content Public
    reactome/data-content’s past year of commit activity
    Java 1 2 0 0 Updated Feb 14, 2025
  • analysis-service Public

    A RESTful API to access pathway analysis tools

    reactome/analysis-service’s past year of commit activity
    Java 4 3 1 1 Updated Feb 14, 2025
  • reactome/PathwayBrowser’s past year of commit activity
    TypeScript 0 0 0 0 Updated Feb 13, 2025
  • Website Public

    Contains the code and configuration for the website

    reactome/Website’s past year of commit activity
    PHP 5 GPL-2.0 2 1 0 Updated Feb 13, 2025
  • reactome_galaxy Public

    This is for running the analysis service

    reactome/reactome_galaxy’s past year of commit activity
    Kotlin 0 Apache-2.0 0 1 0 Updated Feb 12, 2025
  • release-qa Public

    A collection of tools to perform QA checks during the Release process.

    reactome/release-qa’s past year of commit activity
    Java 2 1 4 8 Updated Feb 12, 2025