Update usage text

rrwick · Jun 9, 2023 · 09fb308 · 09fb308
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diff --git a/README.md b/README.md
@@ -173,7 +173,8 @@ Simulation parameters:
   Length and identity and error distributions
 
   --length LENGTH                 Fragment length distribution (mean and stdev, default: 15000,13000)
-  --identity IDENTITY             Sequencing identity distribution (mean, max and stdev, default:
+  --identity IDENTITY             Sequencing identity distribution (mean,max,stdev for beta
+                                  distribution or mean,stdev for normal qscore distribution, default:
                                   95,99,2.5)
   --error_model ERROR_MODEL       Can be "nanopore2018", "nanopore2020", "nanopore2023", "pacbio2016",
                                   "random" or a model filename (default: nanopore2023)

diff --git a/badread/__main__.py b/badread/__main__.py
@@ -98,7 +98,7 @@ def simulate_subparser(subparsers):
                                'default: DEFAULT)')
     sim_args.add_argument('--identity', type=str, default='95,99,2.5',
                           help='Sequencing identity distribution (mean,max,stdev for beta '
-                               'distribution, or mean,stdev for normal qscore distribution, '
+                               'distribution or mean,stdev for normal qscore distribution, '
                                'default: DEFAULT)')
     sim_args.add_argument('--error_model', type=str, default='nanopore2023',
                           help='Can be "nanopore2018", "nanopore2020", "nanopore2023", '