Add Guppy v0.3.0 results

rrwick · Dec 5, 2017 · 00dd1ac · 00dd1ac
1 parent 9a6e894
commit 00dd1ac
Show file tree

Hide file tree

Showing 15 changed files with 57,404 additions and 36 deletions.
diff --git a/README.md b/README.md
diff --git a/images/assembly_identity.png b/images/assembly_identity.png
diff --git a/images/nanopolish_identity.png b/images/nanopolish_identity.png
diff --git a/images/nanopolish_meth_identity.png b/images/nanopolish_meth_identity.png
diff --git a/images/read_assembly_scatter.png b/images/read_assembly_scatter.png
diff --git a/images/read_identity.png b/images/read_identity.png
diff --git a/images/rel_assembly_length.png b/images/rel_assembly_length.png
diff --git a/images/rel_read_length.png b/images/rel_read_length.png
diff --git a/images/total_yield.png b/images/total_yield.png
diff --git a/plot_results.R b/plot_results.R
@@ -13,15 +13,15 @@ basecaller_colours <- c(basecaller_colours, "#F0DF46")
 basecaller_names <- c(basecaller_names, "Albacore v0.8.4", "Albacore v0.9.1", "Albacore v1.1.2", "Albacore v1.2.6", "Albacore v2.0.2", "Albacore v2.1.3")
 basecaller_colours <- c(basecaller_colours, "#FCBBA1", "#F29A87", "#E87A6C", "#DF5952", "#D53937", "#CB181D")
 
+basecaller_names <- c(basecaller_names, "Guppy v0.3.0")
+basecaller_colours <- c(basecaller_colours, "#D6934F")
+
 basecaller_names <- c(basecaller_names, "Scrappie events v1.0.0", "Scrappie events v1.1.1")
 basecaller_colours <- c(basecaller_colours, "#788CC8", "#6175B1")
 
 basecaller_names <- c(basecaller_names, "Scrappie raw v1.0.0", "Scrappie raw v1.1.1 raw_r94", "Scrappie raw v1.1.1 rgr_r94", "Scrappie raw v1.1.1 rgrgr_r94")
 basecaller_colours <- c(basecaller_colours, "#C4B2C8", "#BA9AC0", "#AF83B9", "#A56BB1")
 
-basecaller_names <- c(basecaller_names, "basecRAWller v0.1")
-basecaller_colours <- c(basecaller_colours, "#A3D9A9")
-
 basecaller_names <- c(basecaller_names, "DeepNano e8a621e")
 basecaller_colours <- c(basecaller_colours, "#6BB275")
 

diff --git a/results/guppy_v0.3.0_assembly.tsv b/results/guppy_v0.3.0_assembly.tsv
diff --git a/results/guppy_v0.3.0_nanopolish.tsv b/results/guppy_v0.3.0_nanopolish.tsv
diff --git a/results/guppy_v0.3.0_nanopolish_meth.tsv b/results/guppy_v0.3.0_nanopolish_meth.tsv
diff --git a/results/guppy_v0.3.0_reads.tsv b/results/guppy_v0.3.0_reads.tsv
diff --git a/results/read_counts_and_yields.tsv b/results/read_counts_and_yields.tsv
@@ -7,6 +7,7 @@ Albacore v1.1.2	55716	1150695047
 Albacore v1.2.6	55716	1164734914
 Albacore v2.0.2	55716	1158819551
 Albacore v2.1.3	55716	1175106958
+Guppy v0.3.0	55716	1174716030
 Scrappie events v1.0.0	55716	1081465849
 Scrappie events v1.1.0	55716	1045501820
 Scrappie events v1.1.1	55716	1047218897
@@ -17,7 +18,6 @@ Scrappie raw v1.1.0 rgrgr_r94	55716	1119626849
 Scrappie raw v1.1.1 raw_r94	55716	1093037223
 Scrappie raw v1.1.1 rgr_r94	55716	1087841071
 Scrappie raw v1.1.1 rgrgr_r94	55716	1158908640
-basecRAWller v0.1	55716	1234638028
 DeepNano e8a621e	55708	1142759016
 Chiron v0.2	55716	1142992582
 Chiron v0.3	55716	1184211547