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[**Boža V, Brejová B, Vinař T**. DeepNano: Deep recurrent neural networks for base calling in MinION Nanopore reads. _PLoS ONE_ 2017;12.](https://doi.org/10.1371/journal.pone.0178751)

[**Jain M, Koren S, Quick J, Rand AC, Sasani TA _et al._**. Nanopore sequencing and assembly of a human genome with ultra-long reads. _bioRxiv_ 2017.](https://doi.org/10.1101/128835)
[**Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, _et al_**. Nanopore sequencing and assembly of a human genome with ultra-long reads. _Nat Biotechnol_ 2018.](https://doi.org/10.1038/nbt.4060)

[**Loman NJ, Quick J, Simpson JT**. A complete bacterial genome assembled _de novo_ using only nanopore sequencing data. _Nature Methods_ 2015;12:733–735.](https://doi.org/10.1038/nmeth.3444)

[**Stoiber M, Brown J**. BasecRAWller: Streaming Nanopore Basecalling Directly from Raw Signal. _bioRxiv_ 2017.](https://doi.org/10.1101/133058)
[**Stoiber M, Brown J**. BasecRAWller: Streaming nanopore basecalling directly from raw signal. _bioRxiv_ 2017.](https://doi.org/10.1101/133058)

[**Vaser R, Sovic I, Nagarajan N, Sikic M**. Fast and accurate _de novo_ genome assembly from long uncorrected reads. _Genome Res_ 2017;27(5):737–46.](https://doi.org/10.1101/gr.214270.116)

[**Teng HH, Hall MB, Duarte T, Cao MD, Coin LJM**. Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning. _bioRxiv_ 2017.](https://doi.org/10.1101/179531)

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