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Please maintain the support of old version Seurat #169

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Landau1994 opened this issue Nov 9, 2023 · 13 comments
Open

Please maintain the support of old version Seurat #169

Landau1994 opened this issue Nov 9, 2023 · 13 comments

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@Landau1994
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While I install, I encounter an error, I think this is a bug:

Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  namespace ‘Seurat’ 4.3.0.1 is being loaded, but >= 5.0.0 is required

I think this is due to:
https://github.com/satijalab/seurat-wrappers/blob/master/DESCRIPTION

Imports:
    BiocManager,
    cowplot,
    ggplot2,
    igraph,
    Matrix,
    methods,
    remotes,
    rsvd,
    Seurat (>= 5.0.0),
    stats,
    utils,
    rlang

Will the author still support older version Seurat?

@micahtratt
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Is am also running Seurat 4.3 and am unable to install the seurat wrappers package. Is there a way to download an older version that is compatible with this older version of Seurat?

@yamihn
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yamihn commented Nov 17, 2023

please can u provide a solution?

@chanfree
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really hope to use seurat wrappers in old version Seurat, please!

@bingy007
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Same here! Hope to use seurat-wrappers for Seurat v4.

@ollieeknight
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heya guys, I think remotes::install_github('satijalab/seurat-wrappers@community-vignette') should work.

@csu06gnauh
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Thank you, @ollieeknight ! This works for me!

@yiqianzhang0121
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heya guys, I think remotes::install_github('satijalab/seurat-wrappers@community-vignette') should work.

Thanks, very useful!

@soniyalama
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Worked for me as well, on R version 3.6.3, Seurat version 3.1.5! Thanks @ollieeknight

@TsangCM
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TsangCM commented Jun 7, 2024

heya guys, I think remotes::install_github('satijalab/seurat-wrappers@community-vignette') should work.

Thank you, @ollieeknight! Worked for me on R version 4.1.0, but i got the SeuratWrappers version 0.2.0, which lacks the RunPrestoAll function. This function might be available in a later version of SeuratWrappers. Is there a way to manually install SeuratWrappers version 0.3.0 or higher?

@322029
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322029 commented Jun 12, 2024

heya guys, I think remotes::install_github('satijalab/seurat-wrappers@community-vignette') should work.

Thank you, @ollieeknight! Worked for me on R version 4.1.0, but i got the SeuratWrappers version 0.2.0, which lacks the RunPrestoAll function. This function might be available in a later version of SeuratWrappers. Is there a way to manually install SeuratWrappers version 0.3.0 or higher?

Tentatively, copying the codes https://rdrr.io/github/satijalab/seurat-wrappers/src/R/presto.R https://rdrr.io/github/satijalab/seurat-wrappers/src/R/internal.R works (Seurat v4.4.0).

@BoTang1
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BoTang1 commented Jun 26, 2024

Hi guys, Is there any way that we can install SeuratWrappers version 0.3.0 or higher?
Thanks for provide a way. @ollieeknight However, I still got SeuratWrappers version 0.2.0.

@soniyalama
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You can install it using https://anaconda.org/search?q=seuratwrappers

@BoTang1
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BoTang1 commented Jun 27, 2024

You can install it using https://anaconda.org/search?q=seuratwrappers

It works for me. Thank you @soniyalama

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