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Could you please tell me how to use ReadXenium() to load the New 10x Xenium Bundle?_no more "cell_feature_matrix" #9468

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imamura-masaki opened this issue Nov 10, 2024 · 0 comments

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@imamura-masaki
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A new Xenium Bundle using 5k panels has been released by 10X (https://www.10xgenomics.com/datasets/preview-data-xenium-prime-gene-expression), but I cannot load it using ReadXenium().
There was a similar question before, and when I entered the same code, the following error occurred. It seems that the cause is that barcode.tsv.gz does not exist in the cell_feature_matrix file.
Could you please tell me how to solve this problem and the code?

data <- ReadXenium(data.dir = DIR) Read10X(data.dir = file.path(data.dir, "cell_feature_matrix.zarr")) でエラー: Barcode file missing. Expecting barcodes.tsv.gz Called from: Read10X(data.dir = file.path(data.dir, "cell_feature_matrix.zarr"))

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