Skip to content

Issues: satijalab/seurat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

352 Open 7,658 Closed
352 Open 7,658 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error in SCTransform: Warning message: In size + sum(size_args, na.rm = FALSE) : NAs produced by integer overflow ( Similar to Issue #9316)
#9484 opened Nov 14, 2024 by JosephEDuke-Cohan
Issue in "Error in object[[assay]][] <- grp.cors: object of type 'S4' is not subsettable" as shown in spatial_vignette.Rmd because new Seurat assay required subset method documentation Error in documentation
#9483 opened Nov 14, 2024 by joesphbeller
Strong impact of number of ADT PCs on WNN UMAP?
#9482 opened Nov 14, 2024 by erflynn
FeaturePlot for spatial transcriptomics data does not work bug Something isn't working
#9481 opened Nov 14, 2024 by Yijia-Jiang
Error in validObject(object = object) : invalid class “Assay5” object: Layers must be two-dimensional objects
#9476 opened Nov 13, 2024 by sguttr
1
Problem with LoadXenium (+ self-fix that i need a sanity check on) and advice on labelling sample tissue microarray
#9474 opened Nov 12, 2024 by YfCem
Setting Expression Threshold for Molecule Visualization in ImageDimPlot
#9472 opened Nov 11, 2024 by sallyseullee-0821
1
Could you please tell me how to use ReadXenium() to load the New 10x Xenium Bundle?_no more "cell_feature_matrix"
#9468 opened Nov 10, 2024 by imamura-masaki
DietSeurat doesn't drop layers from objects bug Something isn't working duplicate This issue or pull request already exists
#9464 opened Nov 8, 2024 by rharao
3
Is there a vignette/updated pipeline for Akoya qptiffs?
#9463 opened Nov 8, 2024 by salasd
Incorrect Layer Naming and Barcode Misalignment When Merging Seurat Objects Missing an Assay bug Something isn't working
#9462 opened Nov 8, 2024 by maartenciers
Error in SCTransform: Missing cell.attr Argument When Regressing mitoRatio bug Something isn't working
#9461 opened Nov 7, 2024 by EsToHi
Error with LoadVizgen in Seurat: Possible Issue with .obj File or Manual Loading Needed?
#9460 opened Nov 7, 2024 by drchubos
How do I subset based on RAW counts?
#9459 opened Nov 7, 2024 by alexwskh
5
Error: make_cell_attr - log_umi contains NA, NaN, or infinite value in SCTransform
#9456 opened Nov 6, 2024 by unikill066
1
SpatialPlot not working as its supposed to bug Something isn't working
#9455 opened Nov 6, 2024 by Aditya-Gautam20
7
Seurat V5 integration error: "Error in UseMethod(generic = "Assays", object = object) "
#9454 opened Nov 6, 2024 by cherrie-g
1
The example file does not exist.
#9453 opened Nov 6, 2024 by yoyoong
Mismatch in Dotplot of raw counts and normalized data
#9452 opened Nov 4, 2024 by Rong-ao
How to analysis the DEGs between smartseq2 data and 10x data
#9451 opened Nov 2, 2024 by Linxiaobuskiy
Zero score when annotate new visium dataset using a reference
#9450 opened Nov 2, 2024 by Chrisdoan9
Loading Pre-Annotated Regions for Visium Analysis
#9448 opened Nov 1, 2024 by abadgerw
Demultiplexing with hashtag oligos vignette - bad link documentation Error in documentation
#9445 opened Oct 31, 2024 by jkelrod97
SCTransform + Harmony integration --> FindMarkers issue
#9444 opened Oct 31, 2024 by bbmorris1
Why do FindMarkers DE p-values vary significantly between V4 and V5? bug Something isn't working
#9443 opened Oct 31, 2024 by mauritsunkel
ProTip! Exclude everything labeled bug with -label:bug.