An interface for training and evaluating deep learning models, targeting microscopy.

Installation

Windows

Download and run the installer from here. On first launch, you may encounter a warning that the program is not signed. For now, please disregard this warning as we work on a fix.

Known problems

White screen on boot, and ctrl+shift+i shows an error that zeromq could not be found. The solution is to install the vc_redist from here: https://support.microsoft.com/en-us/help/2977003/the-latest-supported-visual-c-downloads. Future versions will install this with the app.

Mac

Download and run the installer from here. To launch the app, command click it in the and click run. You may encounter a warning that the program is not signed. For now, please disregard this warning as we work on a fix.

Building from source

Needed:

Node
Python>=3.6
git

Create a folder and in a terminal run

git clone https://github.com/softmatterlab/DeepTrack-2.0-app .

Then run

npm install

followed by

pip install numpy
pip install -r requirements.txt

Note that numpy needs to be installed first, because scikit-image currently have some issues with installing if it isn't installed first.

One this is done, run, in order,

npm run build
npm run build-server

This will create the production version of the app. Now it can be run with

npm run start-prod