CellFlow is a framework for predicting phenotypic responses of complex perturbations at the single-cell level.
.. image:: docs/_static/images/cellflow_light.png :width: 800px :align: center :class: only-light
- Modeling the effect of single and combinatorial drug treatments
- Predicting the phenotypic response to genetic perturbations
- Modeling the development of perturbed organisms
- Cell fate engineering
- Optimizing protocols for growing organoids
- ... and more; check out the documentation for more information.
Install CellFlow by running::
pip install cellflow
In order to install CellFlow in editable mode, run::
git clone https://github.com/theislab/cell_flow_perturbation
cd cfp
pip install -e .
For further instructions how to install jax, please refer to https://github.com/google/jax.
TODO
