e-Merlin Provenance Generation

Scripts for the generation of e-merlin provenance

Stand-alone Instructions

Install provenance generation software

pip install praetor

Provenance generation settings setup

echo 'PRAETOR="/path/to/provenance/output/directory/"'

Copy the settings file to /path/to/provenance/output/directory/ and alter as necessary.

Run the following to execute the pipeline and generate the provenance for the casa6/python3 version:

praetor_run.py python eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py -r calibration

For casa5/python2

praetor_run.py casa -c eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py -r calibration

For further information on installing and running the e-merlin pipeline, please see (here)[https://github.com/e-merlin/eMERLIN_CASA_pipeline/tree/master]

Testing the generation with Docker

Download, unzip and place the test data from here into your build directory.

Build the container from the Dockerfile in this repo

docker build . -t casa/conda

Enable docker to access xterm, if necessary:

xhost +local:docker

Start the container with the run command provided:

./docker_run_command.sh

Run the pipeline with the generation software:

cd /home/TS8004_C_001_20190801
praetor_ruu.py python ../eMERLIN_CASA_pipeline/eMERLIN_CASA_pipeline.py -r calibration