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unikill066/README.md

๐Ÿ’ซ About Me:

๐Ÿ”ญ Iโ€™m currently working as a Data Science and Neuroinformatics Intern at the Center for Advanced Pain Studies (CAPS), where I dive into projects on machine learning models and bioinformatics pipelines for genomic analysis. ๐ŸŒ My projects span developing pipelines for spatial transcriptomics, creating object detection models for neuron identification, integrating omics and proteomics data, and automating workflows with Docker and NextFlow.

๐Ÿ”ฌ My research interests include exploring non-coding RNA datasets to uncover their roles in neuropathy and chronic pain pathways. ๐Ÿงฌ Iโ€™m also working with tools like AlphaFold, ESMFold, and RosettaFold to deepen our understanding of protein-folding in these processes.

๐Ÿ‘ฅ Iโ€™m always open to collaborations in bioinformatics, particularly on projects involving machine learning! Iโ€™m also eager to help automate sequencing data pipelines for single-cell data (CellRanger), spatial transcriptomics (SpaceRanger), Bulk-RNA-seq, ATAC-seq, and XeniumRanger, aiming for minimal manual intervention.

๐Ÿ“˜ Currently, Iโ€™m expanding my expertise in proteomics and systems neuroscience while pursuing a Master of Science in Business Analytics and Artificial Intelligence.

๐ŸŒฑ My journey into Neuroinformatics began as a Student Assistant with Dr. Tavares, where I developed a deep curiosity that led me to join CAPS in February 2023. I transitioned into an intern role, contributing to neuron detection and data pipeline projects.

๐ŸŒ„ Outside the lab, Iโ€™m always up for adventureโ€”be it trekking, cycling new terrains, running, or camping. One memorable challenge: I once cycled 50 miles through mountainous terrain, reveling in every mile! This spirit of exploration fuels everything I do, in the lab and beyond.

๐ŸŒŸ Explore My Work:

Curious about my journey?

๐Ÿ”— Explore my Portfolio, and get in touch!

๐ŸŒ Socials:

LinkedIn Stack Overflow

๐Ÿ’ป Tech Stack:

Python R AWS Azure Netlify Heroku Java HTML5 CSS3 Shell Script GithubPages Anaconda Apache Hive Django Flask Jinja Socket.io Nginx Apache Tomcat AmazonDynamoDB ApacheCassandra CockroachLabs MariaDB MicrosoftSQLServer MongoDB MySQL Postgres Redis SQLite Teradata Keras Matplotlib mlflow NumPy Pandas Plotly PyTorch scikit-learn Scipy TensorFlow GitLab CI GitHub Actions Bitbucket Git GitLab GitHub Kubernetes Docker Postman Prezi

๐Ÿ“Š GitHub Stats:



๐Ÿ” Top Contributed Repo

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  1. utdal/ATACSeq-NextFlow-Pipeline utdal/ATACSeq-NextFlow-Pipeline Public

    This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.

    Shell 1

  2. utdal/Bulk-RNA-Seq-Nextflow-Pipeline utdal/Bulk-RNA-Seq-Nextflow-Pipeline Public

    This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landsโ€ฆ

    Nextflow

  3. Normalize-H-and-E-images Normalize-H-and-E-images Public

    A method for normalizing H and E images

    Jupyter Notebook

  4. BLAST-Search BLAST-Search Public

    Search and Alignment Tool in Bioinformatics Domain

    Shell

  5. utdal/TRAP-Analysis utdal/TRAP-Analysis Public

    TRAP-Analysis tool enables the investigation of cell-specific mRNA associations with ribosomes obtained from Translating Ribosome Affinity Purification (TRAP) sequencing.

    Python

  6. Natural-Language-Processing Natural-Language-Processing Public

    Jupyter Notebook