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Bumped python version number #208

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Bumped python version number

Bumped python version number #208

Workflow file for this run

.github/workflows/ci.yml at 2f93611
name: ci
on:
pull_request:
types: [opened, synchronize, reopened, ready_for_review]
paths-ignore:
- '.github/workflows/dist.yml'
- '.github/workflows/wheels.yml'
- '.gitignore'
- 'build-all-presets.sh'
- 'CMakePresets.json'
push:
# branches:
# - master
paths-ignore:
- '.github/workflows/dist.yml'
- '.github/workflows/wheels.yml'
- '.gitignore'
- 'build-all-presets.sh'
- 'CMakePresets.json'
workflow_dispatch:
inputs:
# name:
# description: 'NAME: File will be called name.lowercase()-VER-REL.tar.gz'
# required: true
# default: 'PhreeqcRM'
date:
description: 'DATE: Leave blank to use todays date'
required: false
default: ''
rel:
description: 'REL: Leave blank to automatically generate (2021-03-09 = 15700)'
required: false
default: ''
ver:
description: 'VER: Leave blank to use MAJOR.MINOR.(PATCH+1) (from https://github.com/usgs-coupled/phreeqc-version/blob/main/phreeqc-version.txt)'
required: false
default: ''
env:
# NAME: PhreeqcRM
BUILD_TYPE: Release
jobs:
log-the-inputs:
runs-on: ubuntu-latest
steps:
- run: |
# echo "Name: $NAME"
echo "Date: $DATE"
echo "REL: $REL"
echo "VER: $VER"
env:
# NAME: ${{ inputs.name }}
DATE: ${{ inputs.date }}
REL: ${{ inputs.rel }}
VER: ${{ inputs.ver }}
init:
if: github.event.pull_request.draft == false
runs-on: ubuntu-latest
env:
# NAME: ${{ inputs.name }}
DATE: ${{ inputs.date }}
REL: ${{ inputs.rel }}
VER: ${{ inputs.ver }}
# Map step outputs to job outputs
outputs:
# NAME: ${{ steps.vars.outputs.NAME }}
# NAME_LOWERCASE: ${{ steps.vars.outputs.NAME_LOWERCASE }}
VER: ${{ steps.vars.outputs.VER }}
REL: ${{ steps.vars.outputs.REL }}
DATE: ${{ steps.vars.outputs.DATE }}
DATE_FULL: ${{ steps.vars.outputs.DATE_FULL }}
DATE_RFC_3339: ${{ steps.vars.outputs.DATE_RFC_3339 }}
steps:
- name: Setup vars
id: vars
run: |
# if [ -z "${NAME}" ]; then
# echo NAME="PhreeqcRM" >> "${GITHUB_OUTPUT}"
# echo NAME_LOWERCASE=$(echo "PhreeqcRM" | tr '[:upper:]' '[:lower:]') >> "${GITHUB_OUTPUT}"
# else
# echo NAME="${NAME}" >> "${GITHUB_OUTPUT}"
# echo NAME_LOWERCASE=$(echo "${NAME}" | tr '[:upper:]' '[:lower:]') >> "${GITHUB_OUTPUT}"
# fi
if [ -z "${VER}" ]; then
echo VER="$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/next_ver.sh | sh)" >> "${GITHUB_OUTPUT}"
else
echo VER="${VER}" >> "${GITHUB_OUTPUT}"
fi
if [ -z "${REL}" ]; then
echo REL="$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/rel.py | python3)" >> "${GITHUB_OUTPUT}"
else
echo REL="${REL}" >> "${GITHUB_OUTPUT}"
fi
if [ -z "${DATE}" ]; then
echo DATE="$(TZ='America/Denver' date '+%x')" >> "${GITHUB_OUTPUT}"
echo DATE_RFC_3339="$(TZ='America/Denver' date --rfc-3339=date)" >> "${GITHUB_OUTPUT}"
echo DATE_FULL="$(TZ='America/Denver' date)" >> "${GITHUB_OUTPUT}"
else
echo DATE="${DATE}" >> "${GITHUB_OUTPUT}"
echo DATE_RFC_3339="$(TZ='America/Denver' date --rfc-3339=date --date=${DATE})" >> "${GITHUB_OUTPUT}"
echo DATE_FULL="$(TZ='America/Denver' date --date=${DATE})" >> "${GITHUB_OUTPUT}"
fi
results:
name: display results
needs: init
runs-on: ubuntu-latest
steps:
- name: results
run: |
# echo NAME="${{ needs.init.outputs.NAME }}"
echo VER="${{ needs.init.outputs.VER }}"
echo REL="${{ needs.init.outputs.REL }}"
echo DATE="${{ needs.init.outputs.DATE }}"
echo DATE_RFC_3339="${{ needs.init.outputs.DATE_RFC_3339 }}"
echo DATE_FULL="${{ needs.init.outputs.DATE_FULL }}"
# echo TARBALL="${{ needs.init.outputs.NAME_LOWERCASE }}-${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}.tar.gz"
echo TARBALL="phreeqcrm-${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}.tar.gz"
valgrind:
# if: ${{ false }}
name: valgrind
strategy:
fail-fast: false
matrix:
os: [ubuntu-24.04, ubuntu-22.04]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- name: update apt-get
run: sudo apt-get -y update
- name: install yaml-cpp
run: sudo apt-get -y install libyaml-cpp-dev
- name: install ninja
run: sudo apt-get -y install ninja-build
- name: install libc6-dbg
run: sudo apt-get -y install libc6-dbg
- name: install valgrind
run: sudo snap install valgrind --classic
- name: ctest -S cmemcheck.cmake
run: ctest -S cmemcheck.cmake -VV --output-on-failure -j 2
distcheck:
# if: ${{ false }}
name: make distcheck
needs: init
runs-on: ubuntu-latest
# env:
# # NAME is consumed by jenkins-dist.sh
# NAME: ${{ needs.init.outputs.NAME }}
steps:
- uses: actions/checkout@v4
- name: autoreconf
run: autoreconf -fvi
- name: versioning
run: ./jenkins-dist.sh -v ${{ needs.init.outputs.VER }} -r ${{ needs.init.outputs.REL }} -d ${{ needs.init.outputs.DATE }}
- name: prepare doxygen
run: sudo apt-get -y install doxygen graphviz
- name: update doxygen using micromamba env
uses: mamba-org/setup-micromamba@v1
with:
environment-file: Doxygen/doxygen.environment.yml
- name: run doxygen
shell: micromamba-shell {0}
run: cd Doxygen && make
- name: install yaml-cpp and dos2unix
run: sudo apt-get -y install libyaml-cpp-dev dos2unix
- name: mkdir
run: mkdir ${{github.workspace}}/_build
- name: configure
shell: bash
working-directory: ${{github.workspace}}/_build
run: ../configure --prefix=$(pwd)/INSTALL
- name: make distcheck
shell: bash
working-directory: ${{github.workspace}}/_build
run: DISTCHECK_CONFIGURE_FLAGS="--enable-fortran-test --with-yaml-cpp" make -j2 distcheck
- uses: actions/upload-artifact@v4
with:
name: tarball
path: ${{github.workspace}}/_build/*.tar.gz
- name: PhreeqcRM_ReadMe.txt
shell: bash
run: cp doc/README.TXT PhreeqcRM_ReadMe.txt
- uses: actions/upload-artifact@v4
with:
name: readme
path: ${{github.workspace}}/PhreeqcRM_ReadMe.txt
- name: unix2dos
shell: bash
run: git ls-files --eol | grep -v '^i/-text' | grep -v '^i/ ' | grep -v 'Makefile.am' | grep -v 'configure.ac' | awk -F $'\t' '{print $2}' | xargs unix2dos
- name: make dist-zip
shell: bash
working-directory: ${{github.workspace}}/_build
run: make dist-zip
- uses: actions/upload-artifact@v4
with:
name: zip
path: ${{github.workspace}}/_build/*.zip
autotools:
# if: ${{ false }}
name: autotools
needs: [init, distcheck]
strategy:
fail-fast: false
matrix:
os: [macos-latest, ubuntu-latest]
runs-on: ${{ matrix.os }}
env:
VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}
steps:
- uses: actions/download-artifact@v4
with:
name: tarball
# - name: Install GNU Fortran (macOS)
# if: ${{ runner.os == 'macOS' }}
# uses: awvwgk/setup-fortran@main
# with:
# compiler: gcc
# version: 12
# - name: Verify gfortran
# run: |
# which gfortran
# gfortran --version
- name: Install ninja yaml-cpp valgrind (Linux)
if: runner.os == 'Linux'
run: |
sudo apt-get -y update
sudo apt-get install -y ninja-build valgrind libyaml-cpp-dev
- name: Install gcc(gfortran) ninja yaml-cpp (macOS)
if: runner.os == 'macOS'
run: |
brew reinstall gcc
brew install ninja yaml-cpp
# ls -alR /usr/local/Cellar/
- name: Verify gfortran
run: |
which gfortran
gfortran --version
- name: Extract tarball
run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz
- name: mkdir build
run: mkdir ${{ github.workspace }}/build
- name: Configure with autotools
working-directory: ${{ github.workspace }}/build
run: ../phreeqcrm-${{ env.VER_STRING }}/configure --enable-fortran-test --with-yaml-cpp
- name: Print phreeqcrm.pc
working-directory: ${{ github.workspace }}/build
run: cat phreeqcrm.pc
- name: Build with autotools
working-directory: ${{ github.workspace }}/build
run: make -j4
- name: Make check
working-directory: ${{ github.workspace }}/build
run: make check -j4
- name: cat Tests/test-suite.log
if: ${{ always() }}
working-directory: ${{ github.workspace }}/build
run: cat Tests/test-suite.log
- name: Install with autotools
working-directory: ${{ github.workspace }}/build
run: sudo make install
- name: Run ldconfig (Linux)
if: runner.os == 'Linux'
working-directory: ${{ github.workspace }}/build
run: sudo ldconfig
- name: Cleanup
run: rm -rf *
- name: Check phreeqcrm.pc
run: ls -al /usr/local/share/pkgconfig
- name: Set PKG_CONFIG_PATH (macOS)
if: runner.os == 'macOS'
run: echo "PKG_CONFIG_PATH=/usr/local/share/pkgconfig" >> $GITHUB_ENV
- name: Check phreeqcrm.pc cflags
run: pkg-config --cflags phreeqcrm
- name: Check phreeqcrm.pc libs
run: pkg-config --libs phreeqcrm
- uses: actions/checkout@v4
- name: Test autotools install
working-directory: ${{ github.workspace }}/Tests
run: env CC='cc' CXX='c++ -std=c++11' make -f autotools.mk autotools_test && ./autotools_test
- name: Clean autotools test
working-directory: ${{ github.workspace }}/Tests
run: make -f autotools.mk clean
- name: Test autotools pkg-config
working-directory: ${{ github.workspace }}/Tests
run: env CC='cc' CXX='c++ -std=c++11' make -f pkgconfig.mk pkgconfig_test && ./pkgconfig_test
cmake:
# if: ${{ false }}
name: ${{ matrix.os }} shared=${{ matrix.build_shared_libs }} yaml=${{ matrix.phreeqcrm_with_yaml_cpp }} type=${{ matrix.BUILD_TYPE }}
needs: [init, distcheck]
strategy:
fail-fast: false
matrix:
os: [macos-13, ubuntu-20.04, ubuntu-22.04, ubuntu-24.04, windows-2019, windows-2022]
build_shared_libs: [OFF, ON]
phreeqcrm_with_yaml_cpp: [OFF, ON]
BUILD_TYPE: [Debug, Release]
runs-on: ${{ matrix.os }}
env:
VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}
steps:
# Note: This allows ${{ env.VCPKG_INSTALLATION_ROOT }} to be used in the remaining steps
# Although its already set in the environment it can't be accessed using the env context
# until it is stored in the $GITHUB_ENV file
- name: init VCPKG_INSTALLATION_ROOT
shell: bash
run: echo "VCPKG_INSTALLATION_ROOT=$VCPKG_INSTALLATION_ROOT" >> $GITHUB_ENV
- uses: actions/download-artifact@v4
with:
name: tarball
- name: Install GNU Fortran (macOS)
if: ${{ runner.os == 'macOS' }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
version: 12
- name: Install oneAPI Fortran (Windows)
if: ${{ runner.os == 'Windows' }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: intel-classic
version: '2021.10'
- name: Set CC/CXX (Windows)
if: runner.os == 'Windows'
shell: bash
run: |
echo "CC=cl" >> $GITHUB_ENV
echo "CXX=cl" >> $GITHUB_ENV
- name: Install ninja valgrind (Linux)
if: ${{ runner.os == 'Linux' }}
run: |
sudo apt-get -y update
sudo apt-get install -y ninja-build valgrind
- name: Install ninja swig (macOS)
if: ${{ runner.os == 'macOS' }}
run: |
brew install ninja swig
ls -alR /usr/local/Cellar/
- name: Install yaml-cpp (Linux)
if: ${{ runner.os == 'Linux' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: vcpkg install yaml-cpp:x64-linux
- name: Install yaml-cpp (macOS)
if: ${{ runner.os == 'macOS' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: vcpkg install yaml-cpp:x64-osx
- name: Install yaml-cpp (Windows)
if: ${{ runner.os == 'Windows' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: vcpkg install yaml-cpp:x64-windows
# - name: Set up Python ${{ matrix.python-version }}
- name: Set up Python 3.8
uses: actions/setup-python@v5
with:
# python-version: ${{ matrix.python-version }}
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install numpy
python -m pip install PyYAML
python -m pip install pytest
# @todo if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Extract tarball
run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz
- name: Configure with CMake
if: ${{ matrix.phreeqcrm_with_yaml_cpp != 'ON' }}
run: cmake -L -G Ninja -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON
- name: Configure with CMake (using vcpkg toolchain)
if: ${{ matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: cmake -L -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON -DPHREEQCRM_BUILD_PYTHON:BOOL=ON
- name: Print phreeqcrm.pc
working-directory: ${{ github.workspace }}/build
run: cat phreeqcrm.pc
- name: Build with CMake
run: cmake --build ${{ github.workspace }}/build --config ${{ env.BUILD_TYPE }}
- name: Test with CMake
working-directory: ${{ github.workspace }}/build
run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure
- name: Install (Non-Windows)
if: runner.os != 'Windows'
run: sudo cmake --install build
- name: Install (Windows)
if: runner.os == 'Windows'
run: cmake --install build
- name: Run ldconfig (Linux)
if: ${{ runner.os == 'Linux' && matrix.build_shared_libs == 'ON' }}
run: sudo ldconfig
- name: Cleanup (Non-Windows)
if: runner.os != 'Windows'
run: sudo rm -rf *
- name: Cleanup (Windows)
if: runner.os == 'Windows'
run: Remove-Item -Recurse -Force *
- uses: actions/checkout@v4
- name: Test install (configure) (Non-Windows)
if: ${{ matrix.phreeqcrm_with_yaml_cpp != 'ON' }}
working-directory: ${{ github.workspace }}/Tests
run: cmake -L -G Ninja -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON
- name: Test install (configure) (using vcpkg toolchain)
if: ${{ matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
working-directory: ${{ github.workspace }}/Tests
run: cmake -L -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON -DPHREEQCRM_FORTRAN_TESTING:BOOL=ON
- name: Test install (build)
working-directory: ${{ github.workspace }}/Tests
run: cmake --build build --config ${{ env.BUILD_TYPE }}
- name: Test install (ctest) (Non-Windows)
if: runner.os != 'Windows'
working-directory: ${{ github.workspace }}/Tests/build
run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure
- name: Test install (ctest) (Windows)
if: runner.os == 'Windows'
working-directory: ${{ github.workspace }}/Tests/build
run: |
$env:PATH="${{ env.VCPKG_INSTALLATION_ROOT }}\packages\yaml-cpp_x64-windows\bin;C:\Program Files (x86)\PhreeqcRM\bin;$env:PATH"
ctest -C ${{ env.BUILD_TYPE }} --output-on-failure
cmake-mpi:
if: ${{ false }}
name: ${{ matrix.os }} mpi=${{ matrix.mpi }} shared=${{ matrix.build_shared_libs }} yaml=${{ matrix.phreeqcrm_with_yaml_cpp }}
needs: [init, distcheck]
strategy:
fail-fast: false
matrix:
os: [macos-13, ubuntu-20.04, ubuntu-22.04, windows-2019, windows-2022]
build_shared_libs: [ON]
phreeqcrm_with_yaml_cpp: [ON]
mpi: ['mpich', 'ompi', 'impi', 'msmpi'] # see https://github.com/mpi4py/setup-mpi/blob/master/setup-mpi.sh
# BUILD_TYPE: [Debug, Release]
exclude:
- os: macos-13
mpi: 'impi'
- os: macos-13
mpi: 'msmpi'
- os: ubuntu-20.04
mpi: 'msmpi'
- os: ubuntu-22.04
mpi: 'msmpi'
- os: windows-2019
mpi: 'mpich'
- os: windows-2019
mpi: 'ompi'
- os: windows-2022
mpi: 'mpich'
- os: windows-2022
mpi: 'ompi'
timeout-minutes: 20
runs-on: ${{ matrix.os }}
env:
VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}
steps:
# Note: This allows ${{ env.VCPKG_INSTALLATION_ROOT }} to be used in the remaining steps
# Although its already set in the environment it can't be accessed using the env context
# until it is stored in the $GITHUB_ENV file
- name: init VCPKG_INSTALLATION_ROOT
shell: bash
run: echo "VCPKG_INSTALLATION_ROOT=$VCPKG_INSTALLATION_ROOT" >> $GITHUB_ENV
- uses: actions/download-artifact@v4
with:
name: tarball
- name: Install GNU Fortran (macOS)
if: ${{ runner.os == 'macOS' }}
uses: awvwgk/setup-fortran@main
with:
compiler: gcc
version: 12
# - name: Install oneAPI Fortran (Windows)
# if: ${{ runner.os == 'Windows' }}
# uses: i-RIC/install-intelfortran-action@v1
# with:
# cache: true
- name: Install ninja (Linux)
if: ${{ runner.os == 'Linux' }}
#run: sudo apt-get install -y ninja-build valgrind libyaml-cpp-dev python3-numpy
run: |
sudo apt-get -y update
sudo apt-get install -y ninja-build
- name: Install ninja (macOS)
if: ${{ runner.os == 'macOS' }}
run: |
brew install ninja
ls -alR /usr/local/Cellar/
- name: Install yaml-cpp (Linux)
if: ${{ runner.os == 'Linux' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: vcpkg install yaml-cpp:x64-linux
- name: Install yaml-cpp (macOS)
if: ${{ runner.os == 'macOS' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: vcpkg install yaml-cpp:x64-osx
- name: Install yaml-cpp (Windows)
if: ${{ runner.os == 'Windows' && matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: vcpkg install yaml-cpp:x64-windows
# # - name: Set up Python ${{ matrix.python-version }}
# - name: Set up Python 3.8
# uses: actions/setup-python@v5
# with:
# # python-version: ${{ matrix.python-version }}
# python-version: 3.8
# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip
# python -m pip install numpy
# python -m pip install PyYAML
# python -m pip install pytest
# # @todo if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
# Note: this makes the entire environment available using ${{ env.VARIABLE }} syntax
# see above
- name: Set up Visual Studio shell (Windows)
if: runner.os == 'Windows'
uses: egor-tensin/vs-shell@v2
with:
arch: x64
- name: Setup mpi
uses: mpi4py/setup-mpi@v1
with:
mpi: ${{ matrix.mpi }}
- name: CMake version
run: cmake --version
- name: Locate CMake
if: runner.os == 'Windows'
shell: cmd
run: |
where cmake
- name: Extract tarball
run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz
- name: Configure with CMake
if: ${{ matrix.phreeqcrm_with_yaml_cpp != 'ON' }}
run: cmake -G Ninja -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_BUILD_MPI:BOOL=ON
- name: Configure with CMake (using vcpkg toolchain)
if: ${{ matrix.phreeqcrm_with_yaml_cpp == 'ON' }}
run: cmake -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S phreeqcrm-${{ env.VER_STRING }} -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -DBUILD_SHARED_LIBS:BOOL=${{ matrix.build_shared_libs }} -DPHREEQCRM_WITH_YAML_CPP=${{ matrix.phreeqcrm_with_yaml_cpp }} -DPHREEQCRM_BUILD_MPI:BOOL=ON
- name: Print phreeqcrm.pc
working-directory: ${{ github.workspace }}/build
run: cat phreeqcrm.pc
- name: Build with CMake
run: cmake --build ${{ github.workspace }}/build --config ${{ env.BUILD_TYPE }}
- name: Test with CMake
working-directory: ${{ github.workspace }}/build
run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure
- name: Install (Non-Windows)
if: runner.os != 'Windows'
run: sudo cmake --install build
- name: Install (Windows)
if: runner.os == 'Windows'
run: cmake --install build
# - name: Run ldconfig (Linux)
# if: ${{ runner.os == 'Linux' && matrix.build_shared_libs == 'ON' }}
# run: sudo ldconfig
# - name: Cleanup (Non-Windows)
# if: runner.os != 'Windows'
# run: sudo rm -rf *
# - name: Cleanup (Windows)
# if: runner.os == 'Windows'
# run: Remove-Item -Recurse -Force *
# - uses: actions/checkout@v4
# - name: Test install (configure) (Non-Windows)
# if: runner.os != 'Windows'
# working-directory: ${{ github.workspace }}/Tests
# run: cmake -G Ninja -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON
# - name: Test install (configure) (Windows)
# if: runner.os == 'Windows'
# working-directory: ${{ github.workspace }}/Tests
# run: cmake -G Ninja --toolchain ${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake -B build -S . -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} -D_PHREEQCRM_TEST_INSTALL:BOOL=ON
# - name: Test install (build)
# working-directory: ${{ github.workspace }}/Tests
# run: cmake --build build --config ${{ env.BUILD_TYPE }}
# - name: Test install (ctest) (Non-Windows)
# if: runner.os != 'Windows'
# working-directory: ${{ github.workspace }}/Tests/build
# run: ctest -C ${{ env.BUILD_TYPE }} --output-on-failure
# - name: Test install (ctest) (Windows)
# if: runner.os == 'Windows'
# working-directory: ${{ github.workspace }}/Tests/build
# run: |
# $env:PATH="${{ env.VCPKG_INSTALLATION_ROOT }}\packages\yaml-cpp_x64-windows\bin;C:\Program Files (x86)\PhreeqcRM\bin;$env:PATH"
# ctest -C ${{ env.BUILD_TYPE }} --output-on-failure
deploy_pages:
# todo update github.ref below
if: github.repository == 'usgs-coupled/phreeqcrm' && github.ref == 'refs/heads/master' && github.event_name == 'push'
needs: [init, distcheck]
runs-on: ubuntu-latest
# Grant GITHUB_TOKEN the permissions required to make a Pages deployment
permissions:
actions: read # req'd by actions/deploy-pages@v4
pages: write # to deploy to Pages
id-token: write # to verify the deployment originates from an appropriate source
# Deploy to the github-pages environment
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
env:
VER_STRING: ${{ needs.init.outputs.VER }}-${{ needs.init.outputs.REL }}
steps:
- uses: actions/download-artifact@v4
with:
name: tarball
- run: tar xvzf phreeqcrm-${{ env.VER_STRING }}.tar.gz
- name: Fix permissions
run: |
chmod -c -R +rX "phreeqcrm-${{ env.VER_STRING }}/Doxygen/html" | while read line; do
echo "::warning title=Invalid file permissions automatically fixed::$line"
done
- name: Upload artifact
uses: actions/upload-pages-artifact@v3
with:
path: phreeqcrm-${{ env.VER_STRING }}/Doxygen/html
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v4