ci: add canceling old CI

.github/dependabot.yml

@@ -0,0 +1,6 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"

.github/workflows/ci.yml

@@ -12,7 +12,7 @@ jobs:
     strategy:
       max-parallel: 4
       matrix:
-        python-version: [ "3.8", "3.9", "3.10", "3.11" ]
+        python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]
     name: Tests for Python ${{ matrix.python-version }}
     steps:
       - uses: actions/checkout@v2

.pre-commit-config.yaml

@@ -1,86 +1,91 @@
 ci:
-  autoupdate_schedule: quarterly
+    autoupdate_schedule: quarterly
 
 repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
-    hooks:
-      - id: check-added-large-files
-        args: [ '--maxkb=1000' ]
-      - id: check-case-conflict
-      - id: check-merge-conflict
-      - id: check-symlinks
-      - id: check-yaml
-      - id: check-toml
-      - id: debug-statements
-      - id: mixed-line-ending
-      - id: requirements-txt-fixer
-      - id: trailing-whitespace
-      - id: detect-private-key
-      - id: fix-byte-order-marker
-      - id: check-ast
+    -   repo: https://github.com/pre-commit/pre-commit-hooks
+        rev: v4.5.0
+        hooks:
+            -   id: check-added-large-files
+                args: [ '--maxkb=1000' ]
+            -   id: check-case-conflict
+            -   id: check-merge-conflict
+            -   id: check-symlinks
+            -   id: check-yaml
+            -   id: check-toml
+            -   id: debug-statements
+            -   id: mixed-line-ending
+            -   id: requirements-txt-fixer
+            -   id: trailing-whitespace
+            -   id: detect-private-key
+            -   id: fix-byte-order-marker
+            -   id: check-ast
 
-  - repo: https://github.com/PyCQA/docformatter
-    rev: v1.7.5
-    hooks:
-      - id: docformatter
-        args: [ -r, --in-place, --wrap-descriptions, '120', --wrap-summaries, '120', -- ]
+    -   repo: https://github.com/PyCQA/docformatter
+        rev: v1.7.5
+        hooks:
+            -   id: docformatter
+                args: [ -r, --in-place, --wrap-descriptions, '120', --wrap-summaries, '120', -- ]
 
-  - repo: https://github.com/pre-commit/pygrep-hooks
-    rev: v1.10.0
-    hooks:
-      - id: python-use-type-annotations
-      - id: python-check-mock-methods
-      - id: python-no-eval
-      #          - id: rst-backticks  # TODO: false positives with coding blocks?
-      - id: rst-directive-colons
+    -   repo: https://github.com/pre-commit/pygrep-hooks
+        rev: v1.10.0
+        hooks:
+            -   id: python-use-type-annotations
+            -   id: python-check-mock-methods
+            -   id: python-no-eval
+            #          - id: rst-backticks  # TODO: false positives with coding blocks?
+            -   id: rst-directive-colons
 
-  - repo: https://github.com/PyCQA/isort
-    rev: 5.13.2
-    hooks:
-      - id: isort
+    -   repo: https://github.com/PyCQA/isort
+        rev: 5.13.2
+        hooks:
+            -   id: isort
 
-  - repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.0
-    hooks:
-      - id: pyupgrade
-        args: [ --py38-plus ]
+    -   repo: https://github.com/asottile/pyupgrade
+        rev: v3.15.0
+        hooks:
+            -   id: pyupgrade
+                args: [ --py38-plus ]
 
-  - repo: https://github.com/asottile/setup-cfg-fmt
-    rev: v2.5.0
-    hooks:
-      - id: setup-cfg-fmt
+    -   repo: https://github.com/asottile/setup-cfg-fmt
+        rev: v2.5.0
+        hooks:
+            -   id: setup-cfg-fmt
 
-  # Notebook formatting
-  - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.1
-    hooks:
-      - id: nbqa-isort
-        additional_dependencies: [ isort ]
+    # Notebook formatting
+    -   repo: https://github.com/nbQA-dev/nbQA
+        rev: 1.7.1
+        hooks:
+            -   id: nbqa-isort
+                additional_dependencies: [ isort ]
 
-      - id: nbqa-pyupgrade
-        additional_dependencies: [ pyupgrade]
-        args: [ --py38-plus ]
+            -   id: nbqa-pyupgrade
+                additional_dependencies: [ pyupgrade ]
+                args: [ --py38-plus ]
 
-  - repo: https://github.com/mgedmin/check-manifest
-    rev: '0.49'
-    hooks:
-      - id: check-manifest
-        stages: [ manual ]
+    -   repo: https://github.com/mgedmin/check-manifest
+        rev: '0.49'
+        hooks:
+            -   id: check-manifest
+                stages: [ manual ]
 
 
-  - repo: https://github.com/roy-ht/pre-commit-jupyter
-    rev: v1.2.1
-    hooks:
-      - id: jupyter-notebook-cleanup
+    -   repo: https://github.com/roy-ht/pre-commit-jupyter
+        rev: v1.2.1
+        hooks:
+            -   id: jupyter-notebook-cleanup
 
-  - repo: https://github.com/sondrelg/pep585-upgrade
-    rev: 'v1.0'
-    hooks:
-      - id: upgrade-type-hints
-        args: [ '--futures=true' ]
+    -   repo: https://github.com/sondrelg/pep585-upgrade
+        rev: 'v1.0'
+        hooks:
+            -   id: upgrade-type-hints
+                args: [ '--futures=true' ]
 
-  - repo: https://github.com/psf/black
-    rev: 23.12.1
-    hooks:
-      - id: black
+    -   repo: https://github.com/astral-sh/ruff-pre-commit
+        rev: "v0.5.0"
+        hooks:
+            -   id: ruff
+                types_or: [ python, pyi, jupyter ]
+                args: [ --fix, --unsafe-fixes, --show-fixes , --line-length=120 ]
+            # Run the formatter.
+            -   id: ruff-format
+                types_or: [ python, pyi, jupyter ]

pyproject.toml

@@ -7,3 +7,58 @@ requires = [
 ]
 
 build-backend = "setuptools.build_meta"
+
+[tool.ruff]
+#src = ["src"]
+line-length = 120
+exclude = [
+    ".tox/*",
+    "*/test*",
+    "*/__init__.py",
+    "*/_version.py",
+]
+[tool.ruff.lint]
+extend-select = [
+    "B",        # flake8-bugbear
+    "I",        # isort
+    "ARG",      # flake8-unused-arguments
+    "C4",       # flake8-comprehensions
+    "EM",       # flake8-errmsg
+    "ICN",      # flake8-import-conventions
+    "G",        # flake8-logging-format
+    "PGH",      # pygrep-hooks
+    "PIE",      # flake8-pie
+    "PL",       # pylint
+    "PT",       # flake8-pytest-style
+    "PTH",      # flake8-use-pathlib
+    "RET",      # flake8-return
+    "RUF",      # Ruff-specific
+    "SIM",      # flake8-simplify
+    "T20",      # flake8-print
+    "UP",       # pyupgrade
+    "YTT",      # flake8-2020
+    "EXE",      # flake8-executable
+    "NPY",      # NumPy specific rules
+    "PD",       # pandas-vet
+]
+ignore = [
+    "UP007",    # type annotation upgrade, breaks pydantic for Python 3.9 (remove once above)
+    "PLR09",    # Too many <...>
+    "PLR2004",  # Magic value used in comparison
+    "ISC001",   # Conflicts with formatter
+    "RET505",   # This is sometimes wanted, protets against accidental intendation
+    "PD901",    # "avoid using `df[...].values`" -> no, this is a very good name if there is only one df
+    "PD011",    # "replace `df[...].values` with `df[...].to_numpy()`" -> not yet, it's not deprecated.
+    # Prefer to have a single way to access the data if we don't care about whether it's a numpy array or not.
+    "PLW0603",  # updating global variables with a function is bad, but we use it for
+    "PLW2901",  # "for loop overwritten by assignment" -> we use this to update the loop variable
+    "PD013",    # "melt over stack": df function, but triggers on tensors
+    "NPY002",   # "Use rnd generator in numpy" -> we use np.random for some legacy stuff but do use the new one where we can
+    "T201",     # Removes prints, we use for output (maybe change to stdout or similar?)
+
+]
+isort.required-imports = ["from __future__ import annotations"]
+
+[tool.ruff.lint.per-file-ignores]
+"tests/**" = ["T20"]
+"noxfile.py" = ["T20"]