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NEXUS Personalized Health Technologies

ETH Technology Platform for Personalized Health

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  1. scAmpi_single_cell_RNA scAmpi_single_cell_RNA Public

    Code related to scRNA analysis using the scAmpi workflow

    R 24 8

  2. TMARKER TMARKER Public archive

    TMARKER is a software for cancer cell nucleus detection, segmentation, counting, and classification.

    HTML 13 7

  3. gExcite_pipeline gExcite_pipeline Public

    single-cell Gene and AnTibody Expression pipeline

    R 2 1

  4. container_workflow container_workflow Public

    Building Containerized Workflows using different workflow engines

    Python 2

  5. smnrp smnrp Public

    Secure Multifunctional Nginx Reverse Proxy

    HTML 2 1

  6. ena_upload_ms ena_upload_ms Public

    Python 2

Repositories

Showing 10 of 46 repositories
  • nexus-se-docs Public

    The central docs repository for all things related to software engineering and internal SE tools

    ETH-NEXUS/nexus-se-docs’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Nov 14, 2024
  • snakemake-report-plugin-custom Public

    A custom report plugin for snakemake workflows

    ETH-NEXUS/snakemake-report-plugin-custom’s past year of commit activity
    Python 0 0 0 0 Updated Nov 12, 2024
  • nexus-app-stack-contrib Public
    ETH-NEXUS/nexus-app-stack-contrib’s past year of commit activity
    Python 1 Apache-2.0 0 1 1 Updated Nov 12, 2024
  • lab_data_management Public

    Lab data management

    ETH-NEXUS/lab_data_management’s past year of commit activity
    HTML 1 MIT 0 15 4 Updated Nov 8, 2024
  • scAmpi_single_cell_RNA Public

    Code related to scRNA analysis using the scAmpi workflow

    ETH-NEXUS/scAmpi_single_cell_RNA’s past year of commit activity
    R 24 GPL-3.0 8 1 2 Updated Nov 7, 2024
  • gExcite_pipeline Public

    single-cell Gene and AnTibody Expression pipeline

    ETH-NEXUS/gExcite_pipeline’s past year of commit activity
    R 2 GPL-3.0 1 0 1 Updated Oct 29, 2024
  • basic_snakemake_workflow Public

    A self contained snakemake workflow to test new features

    ETH-NEXUS/basic_snakemake_workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 24, 2024
  • dcc Public

    docker compose wrapper

    ETH-NEXUS/dcc’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Oct 21, 2024
  • docker-exchange Public

    This is a docker image exchange repo

    ETH-NEXUS/docker-exchange’s past year of commit activity
    0 0 0 0 Updated Oct 17, 2024
  • renku-test-project Public
    ETH-NEXUS/renku-test-project’s past year of commit activity
    0 0 0 0 Updated Oct 9, 2024
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