- snakemake
conda activate /cluster/customapps/nexus/sharedutils/anaconda_envs/snakemake_v6.15.2/
- singularity
snakemake --use-singularity --singularity-args '-B /cluster/work/nexus/' --cores 3
-
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Building Containerized Workflows using different workflow engines
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ETH-NEXUS/container_workflow
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