Do not require gene when genomic accession and transcript are provided to genomic_to_tx_segment #451
Workflow file for this run
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name: checks | |
on: [push, pull_request] | |
jobs: | |
deps: | |
name: deps py${{ matrix.python-version }} | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python3 -m pip install pipenv | |
pipenv install --dev | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: Install dependencies | |
run: python3 -m pip install ".[dev]" | |
- name: Check style | |
run: python3 -m ruff check . && python3 -m ruff format --check . | |
docs: | |
runs-on: ubuntu-latest | |
env: | |
SPHINX_GITHUB_CHANGELOG_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: Install dependencies | |
run: | | |
python3 -m pip install --upgrade pip | |
python3 -m pip install '.[docs]' | |
- name: Attempt docs build | |
working-directory: ./docs | |
run: make html |