fix: Check if MANE transcript exists in UTA, if not select longest compatible #485

	name: checks
	on: [push, pull_request]
	jobs:
	deps:
	name: deps py${{ matrix.python-version }}
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.11", "3.12"]
	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python3 -m pip install pipenv
	pipenv install --dev
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.11

	- name: Install dependencies
	run: python3 -m pip install ".[dev]"

	- name: Check style
	run: python3 -m ruff check . && python3 -m ruff format --check .

	docs:
	runs-on: ubuntu-latest
	env:
	SPHINX_GITHUB_CHANGELOG_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.11

	- name: Install dependencies
	run: \|
	python3 -m pip install --upgrade pip
	python3 -m pip install '.[docs]'

	- name: Attempt docs build
	working-directory: ./docs
	run: make html

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